Basic Information

Insect: Diaprepes abbreviatus
Gene Symbol: Rreb1
Assembly: GCA_034092305.1
Location: JASJET010000122.1:25713449-25718250[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 3.3e-06 0.00047 22.1 1.3 1 23 56 78 56 78 0.99

2 16 0.00011 0.015 17.3 0.3 1 23 91 113 91 113 0.98

3 16 1.8e-05 0.0026 19.8 4.1 1 23 119 141 119 141 0.98

4 16 0.14 20 7.5 0.1 1 23 204 228 204 228 0.92

5 16 0.35 49 6.3 1.2 2 23 234 256 234 256 0.95

6 16 0.049 6.9 9.0 1.4 1 21 302 322 302 323 0.93

7 16 0.1 15 7.9 0.1 1 23 454 476 454 476 0.96

8 16 2.1e-05 0.003 19.5 0.8 1 23 485 507 485 507 0.99

9 16 0.0021 0.29 13.3 2.3 1 23 513 536 513 536 0.97

10 16 0.00072 0.1 14.8 3.0 1 23 947 970 947 970 0.97

11 16 0.00072 0.1 14.7 0.4 2 23 1185 1206 1184 1206 0.97

12 16 0.18 26 7.2 6.3 1 23 1212 1235 1212 1235 0.97

13 16 0.061 8.7 8.7 1.1 1 20 1265 1285 1265 1286 0.94

14 16 0.31 44 6.5 2.8 1 23 1353 1376 1353 1376 0.96

15 16 0.018 2.6 10.3 0.2 3 23 1423 1443 1421 1443 0.94

16 16 0.011 1.5 11.0 5.9 1 23 1449 1471 1449 1471 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	3.3e-06	0.00047	22.1	1.3	1	23	56	78	56	78	0.99
2	16	0.00011	0.015	17.3	0.3	1	23	91	113	91	113	0.98
3	16	1.8e-05	0.0026	19.8	4.1	1	23	119	141	119	141	0.98
4	16	0.14	20	7.5	0.1	1	23	204	228	204	228	0.92
5	16	0.35	49	6.3	1.2	2	23	234	256	234	256	0.95
6	16	0.049	6.9	9.0	1.4	1	21	302	322	302	323	0.93
7	16	0.1	15	7.9	0.1	1	23	454	476	454	476	0.96
8	16	2.1e-05	0.003	19.5	0.8	1	23	485	507	485	507	0.99
9	16	0.0021	0.29	13.3	2.3	1	23	513	536	513	536	0.97
10	16	0.00072	0.1	14.8	3.0	1	23	947	970	947	970	0.97
11	16	0.00072	0.1	14.7	0.4	2	23	1185	1206	1184	1206	0.97
12	16	0.18	26	7.2	6.3	1	23	1212	1235	1212	1235	0.97
13	16	0.061	8.7	8.7	1.1	1	20	1265	1285	1265	1286	0.94
14	16	0.31	44	6.5	2.8	1	23	1353	1376	1353	1376	0.96
15	16	0.018	2.6	10.3	0.2	3	23	1423	1443	1421	1443	0.94
16	16	0.011	1.5	11.0	5.9	1	23	1449	1471	1449	1471	0.98

Sequence Information

Coding Sequence: ATGGAAGAATCACTGGAAACCAGCCACATAACCAAAGAAACATTAGTCAACCAAAGCAGTCGAAGCGATTCAGGAATTTTTTCTGCTACCGCTAACACAACCATCGACCAATCAGCAACTTGTGATAGTGACAACCGAAGTGACTGCAGTTCTCCCGAACGGAAATACGTTTGTCCAATTTGCGATAAAATGCTTACTTCGCAACACAACTTTACTTTACACATTCGATCTCATAACAACGAAGGTGAAGTCCTAGATAACGAAAAGGGTTTTACTTGTAGAATCTGCAATAAGGTGCTCAGTTCAAGTTCTAGTTTAGACCGACATGTGTTAGTTCATAGTGGAGAGCGGCCATTTAACTGCAAATATTGTGGTGATACCTTTACCACTAATGGGaatatgcaccgacatatgagaACTCACTCAAGCAAAGGAGAGAACTACGAGTCTGATGGGAGTACTGATAGTAGCAGTGCAAAAAGCATcgaatataataacaataaagtTGATTCCAAACATAACAACAGCAAGAGAAAGTTGGAGATTGTCGACGAAAGCAATAACAAGAAACGAATCACTGCTAGAGTAAATAATGATACTACTCAGGCTTTTCAGTGCCCTGTATGTAAAAGATATGACTTCAATTCCATTGAAAATCTTGAAGCCCACTTGGAAGATAACCATCCCGAATATCCTGCTAAATGCAGTCAATGTAATCAAATATTCCTCAATAATAAATTGCTTACTATCCACAAGGAAAGGGAGCATGAGCCTAACGTTCCCAAACAATCAGTAGTTGGATTTAAAGATCTTACTTTTGTGGATTTCTCAAGTGAGAAATTTCCTCACATTGCCAGGCACGAGTgtgaaataaatttacacaaagcGGCTGGAAGTCTGAAGTTTCAATGTCAAAAATGCTCCAAGGCATTTCCATGCTCAAGTTCCTTGGAAATTCATGAAAAAAACTGCCTAGAACCACCAACTGGCATAAATTTAAGTAAAACCAATAACGTCTCTGAAGATGATATTAGGCGAGCTGACTTTTTCTCGAGATTAAACCTCCAAGATAACTCGCCTGAAAAAAAGGCTCCTATGACTAAACCACAAAAAGAAGCTCCTACTAAGCTTAGGGAACAACTGGCAAAAGTTATGGATAATACCAAAGATTTGGCTGATATTCAGTCTATTTTATCTAATATTAATATGCAGCAATTACAATCAAAACACAACGAACTTAAAATATCTCCATCCAAGCCAGTCATCGAAGTTGGCAACGAATCATCTAAAAACGAACAAGAAGAAGAATCTCAAGATTCATTTGCAATAGAGTTTCGAAAAATGAAACTTCGAGGCGAGTTTCCTTGCCGATTGTGCACTGCAGTATTTCCAAATTTACGAGCACTAAAAGGTCACAATAGAGCTCATTTAAATGGCAATAACAATGGTACCTATTATTGTAATATGTGTCCTCACTCGTCTATCGACAAAGCTGCTCTCATTCGTCATATGAGAACCCACAACGGTGATCGCCCATATGAATGCGCACTCTGCAATTATGCATTTACCACGAAAGCAAATTGCGAGAGGCATTTACGAAATCGTCATTCTAAAACAACTAGGGAAGAGGTAAAAAAGTCCATTATCTACCATCCATCGGAAGATCCCACCAATGATGAACTTAATAAATTAACAGCTAAAGATGATAATAAGAAATATAACCTTAATTCCTCAATAGAGTCCAATGATTTGAGTCCCGAAAAAGTTCATTGTTCCACTCCAAAGATGCCACCAATTATTAAGACAGATTTAAGTTTTGCTACACCACCAACACTAATTCCCGACTTACAAGCTCTAAAACCTACAAAAATATTCCCAAACATTGATTTTCTacgtaatgaaaatattaaggcGCTTaaagaaaatcgatttttgaacGGAGTACCTCCATTTTTTCCTCAACCTTTCAATCTTACTATTAAACCACCCAATACAATTCCAGAACCTGAAAATGTACCTTCAAAGATACAAGTCAAACCTTTTGAAGCGCTTAAAGAAAATATTGGCTCTTTTGAAGATCATTCTGAGGATGAATATTATGAAGAGGAGGACGAACAACCTCCAATGGATGTGGCGCTTGATTTAAGCAAGAAAAAAATGGATGAAGATAAAAAGCGTTTGGAGGAAGAAGAACCTCAAGACTTAACAAAGAAATTTCCTACTTCACCTGTAATTCCAAGAACGGTTCCTAATGTCAGTGAATTATTTGCTCAACAACTACTTAAATCTCAACCAAAAATTGATCCTGCTGCTCTATACGCAACTCAGTTGGCTAACATGTATCGTAATGGTTTTGGAGGATGGCCCGGCTTTCCTGTCAACCCTTTGCTTTTCCAAGCATTACCAACACTGTCTCGTACCTCTCAAGATCTCAAGGAAAGAATGCAACGATTTCAACTTTGCGGTGGCTCCATGATTACTGAagagttgaaaaattttcaaagtttacAACAGCAACAAAATACCCAACCACTAAATCAACAGCCCCTGCTTAGTCCCGTTTCTGGTTTTAATGGATTCAAGCTCAACCCTGAGGTCAAGCAACCACTTGCAAGAGAAAATAGTTTTTCTCAACCTTCTCCAAAGAAACTTGAAGATGAAAAACCACTTACTGTCAAAATTGAAACGAATTATAACGATAGTGCTCCTAAGATGCCTAGCCCAGCTCAGCAGTTAAAGTCTGACATGATACAGTCACCTAATTCGATTAAAATGGTTATTAAAAATGGTGTTTTAATGCCAAAACAAAAGCAAAGAAGGTATAGAACGGAGCGGCCTTTTACTTGTGAGCACTGCTCCGCCAGATTCACTCTTCGTTCTAATATGGAAAGACATATTAAACAACAACATCCTCAATTTTGGTCTCAAAGACAAAGAGGAAGCGTCGGACAACCTGGTAGAAAACCACAAGGCTTATTACTTAAACCAAACTATTGTGACCTAACAATCCCAAACTATGAACTACCAAAAATGGCTGACTATGATGAAGCTAAGGAACATATTCATGAAAAACTGAAATTTGCTCTCTTAGCTCAACAATATAGAGCAAATCAATTCAATCAAGAGATTAAAAAAGAAGACGATGAAGAAGACTGTGATTTGGTCATCGACGAGAACGAAAACAAGACTGAAGAAGCTAATAACCAAAAAATTGAGTACCAAAGAACTCAAATTCTTGAACAAAAACTTAGAGAGTTACAAGATAAAGTCAAAAATGAAAGAAACGTGAAATCTGAAGAAGATTTAGTTCCTGTATCGAGGCTTTTAGACAATGCATCCCAACAACAGTTCAAAGAATTTTTCAAGAGGGACGGAGAAGATCATGAACTTGGTGTTGGCagtgaagaagatgaagaaggaCTGGTAGCAAGTGGCAGCACCAGTGAAGGAAACATTTCTGGAACAGATGAAAACAGatccGAATCAGAAGCTGTTACCAACGCCGTTCCAGTAAAGAAAAAATCTGCCTACTCACTAGCCCCTAACCGTGTAAGTTGTCCATACTGCAGTCGCAAATTTCCATGGACATCATCTTTACGCCGCCATATTTTAACCCATACTGGACAGAAACCATTTAAGTGCAGCCACTGTCCTCTTTTATTTACTACTAAATCAAACTGTGACCGTCATCTTCTACGCAAACATGGCAACTCGGCTACTACTATCGTCACTAGCGAAGCGTCAAACAACAACACGATGAACTATTTGATGAGGAATGTCCCTGAGCGTCCATTTAAATGCTCCAGCTGTCCTAGCAGTACCTTTTCTACATACTcaaatttaaagaaacatatcAGTTGCAAACATTCAACTAATGCACAAGGGGATGATATTAAAGCTCAAGGTTACGAAGCAGGTAGTTCTGAAGACGAAAAAGTAAACCATACTGAAACTAAAAACGATTGGGAGAGCCAAATAGCTTACAGCAAGTTCCCTGTAGTTACTAGTCTTGAGGGTCATGCTGCAAACACTCAAATTCCCAACTCAGATCTGCCTTTTAAATGTCATTTGTGTGAGAGCTCATTTGCTGAACGCCACCAAGCTTTAGATCACATCAGAGATAAACATGCTTCCGAATATGATCTCTTGATGTCGAAAAATGCTTTGGATGCCAATGCTACCACTCCAGATGAAATGCCTCATCACGATGACGAAGACACAGATATCCGTGGGAAATTTCCTGATTATTCCAATAGAAAAGTAATTTGTGCGTGGTGCATGCGCAGATTTTGGTCAGCAGAAGATCTGAGACGTCATATGCGAACTCACACTGGTGAACGACCTTTCAGTTGCGATATTTGTAGGCGTAGATTTACTTTAAAACACAGCATGCTACGCCACAGGAAAAAACATGCTGTGAACAGCAGTTTTGAAAACGACACCACACATAGTGATGAAGATCTTCCAGAGGAGAAGAAAAATTCCTCTCCAAAGGAAGGAGATAAGCCAGAAGAATCCGATGTCCAAGAAGGTGGTGGCGACTTGATAAGTAACCTTTTAGGAATAAGAGATAGGTCAATTATTGATAAGGTGCTAGACGCTTCAGCTGATGACGCAGCTAAATTATTGGGCGTTAAGAATAGAGCTAAGGATTAA
Protein Sequence: MEESLETSHITKETLVNQSSRSDSGIFSATANTTIDQSATCDSDNRSDCSSPERKYVCPICDKMLTSQHNFTLHIRSHNNEGEVLDNEKGFTCRICNKVLSSSSSLDRHVLVHSGERPFNCKYCGDTFTTNGNMHRHMRTHSSKGENYESDGSTDSSSAKSIEYNNNKVDSKHNNSKRKLEIVDESNNKKRITARVNNDTTQAFQCPVCKRYDFNSIENLEAHLEDNHPEYPAKCSQCNQIFLNNKLLTIHKEREHEPNVPKQSVVGFKDLTFVDFSSEKFPHIARHECEINLHKAAGSLKFQCQKCSKAFPCSSSLEIHEKNCLEPPTGINLSKTNNVSEDDIRRADFFSRLNLQDNSPEKKAPMTKPQKEAPTKLREQLAKVMDNTKDLADIQSILSNINMQQLQSKHNELKISPSKPVIEVGNESSKNEQEEESQDSFAIEFRKMKLRGEFPCRLCTAVFPNLRALKGHNRAHLNGNNNGTYYCNMCPHSSIDKAALIRHMRTHNGDRPYECALCNYAFTTKANCERHLRNRHSKTTREEVKKSIIYHPSEDPTNDELNKLTAKDDNKKYNLNSSIESNDLSPEKVHCSTPKMPPIIKTDLSFATPPTLIPDLQALKPTKIFPNIDFLRNENIKALKENRFLNGVPPFFPQPFNLTIKPPNTIPEPENVPSKIQVKPFEALKENIGSFEDHSEDEYYEEEDEQPPMDVALDLSKKKMDEDKKRLEEEEPQDLTKKFPTSPVIPRTVPNVSELFAQQLLKSQPKIDPAALYATQLANMYRNGFGGWPGFPVNPLLFQALPTLSRTSQDLKERMQRFQLCGGSMITEELKNFQSLQQQQNTQPLNQQPLLSPVSGFNGFKLNPEVKQPLARENSFSQPSPKKLEDEKPLTVKIETNYNDSAPKMPSPAQQLKSDMIQSPNSIKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQFWSQRQRGSVGQPGRKPQGLLLKPNYCDLTIPNYELPKMADYDEAKEHIHEKLKFALLAQQYRANQFNQEIKKEDDEEDCDLVIDENENKTEEANNQKIEYQRTQILEQKLRELQDKVKNERNVKSEEDLVPVSRLLDNASQQQFKEFFKRDGEDHELGVGSEEDEEGLVASGSTSEGNISGTDENRSESEAVTNAVPVKKKSAYSLAPNRVSCPYCSRKFPWTSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNSATTIVTSEASNNNTMNYLMRNVPERPFKCSSCPSSTFSTYSNLKKHISCKHSTNAQGDDIKAQGYEAGSSEDEKVNHTETKNDWESQIAYSKFPVVTSLEGHAANTQIPNSDLPFKCHLCESSFAERHQALDHIRDKHASEYDLLMSKNALDANATTPDEMPHHDDEDTDIRGKFPDYSNRKVICAWCMRRFWSAEDLRRHMRTHTGERPFSCDICRRRFTLKHSMLRHRKKHAVNSSFENDTTHSDEDLPEEKKNSSPKEGDKPEESDVQEGGGDLISNLLGIRDRSIIDKVLDASADDAAKLLGVKNRAKD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00196640;
90% Identity: -
80% Identity: -