Dcit004294.2
Basic Information
- Insect
- Diaphorina citri
- Gene Symbol
- -
- Assembly
- GCA_000475195.1
- Location
- CP125322.1:22118677-22122009[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.089 7.8 8.6 0.3 1 23 274 296 274 296 0.94 2 14 4.4 3.9e+02 3.2 2.0 2 14 376 388 376 400 0.85 3 14 0.47 42 6.3 0.3 1 21 428 448 428 449 0.95 4 14 1.2 1.1e+02 5.0 1.3 1 23 476 500 476 500 0.91 5 14 0.41 37 6.5 2.9 3 23 577 598 576 598 0.97 6 14 8 7.1e+02 2.4 0.2 2 11 624 633 623 637 0.79 7 14 1.1 1e+02 5.1 0.2 6 23 658 675 658 675 0.98 8 14 0.045 4 9.5 0.1 2 23 680 702 679 702 0.89 9 14 0.44 38 6.4 3.0 2 23 704 726 704 726 0.97 10 14 0.0029 0.26 13.2 1.0 2 23 731 753 730 753 0.95 11 14 0.00078 0.069 15.0 1.7 6 23 773 790 773 790 0.99 12 14 1.9 1.7e+02 4.4 0.7 2 23 794 815 793 816 0.93 13 14 2.1e-05 0.0018 20.0 3.4 3 23 822 842 821 842 0.98 14 14 0.075 6.6 8.8 0.0 6 22 852 868 851 868 0.96
Sequence Information
- Coding Sequence
- ATGGATCTCAAAATGAATTATTcagatgataatgatgattcaACTGTTATCATAACAGTAAAAGAAGAATGGGACtctgaaaaagaagatgaatatATTGAAAGTCAACATATGATTgaggaatatgaagaagaagaaatagatcaaaatgttgaggaggaggaggaagaggaagaaggagaacaagaaacaGAAGATCAGCAGCAAATACAAAATCAGGAGCAACAACAATCACTATTGGATCATGAAGAAAAATCAgacaaaaaagtaacaaaaccTGACCAATCAAAAAATAGAACAGATAATGTTTTCATAGACTTATTTCAGCATCCATTTGTTGTGGAATATTTAGAGTATGTTCAATCAAAAGATTCAATGCAAGATGAGGAATCCAATATGGACACTGACTGTGAAACCTTTGTCAATCCCAAGGGTGTATGCAGACTTTGTACTAAAACTGATCAAACTATTTTCATGAGGCtattttataataatgaaaCCTTAACCCCTATTGCAAGTAAAATTGCATATTTAATGGGTCAAGAGAAGGTTGAGCAAGATCTGTTACCACAACAAATTTGTCTGGGATGTTCTGAATTGGTCAACTCAAGTTATAATGCTATTAAACGTTTCTCTGAATCTCATCGCATTCTCTCTGAAGTagttGAGGAgttcaaaaacaaaaatcacatGTTTTACAAGAAAAAAGAGCCACATCAGAAGCATCGTTTGTTTTTGAAGATGCATGACAAGAGCTATGAGTTTTATCCTAAGTCTTCTTCTACATCAAGGGATGAAAgGGGAAACGAGGCAAACTCTTACAGCTGTATCCAATGTAACAGTACATTCCCTACGCAGGCTGAACTCTTAACACACAAGTCCATACATGATAATTGTGATGAGGACTCCAGTATAGCAGGCTCAAGCATCAAGCAAGAGGTTCATGATAGTGATTATGACAGTGAACACAATAGTCAATCTGATCCTAACACTATTGAGCATGAATCTGCCAAAGACGAACTAGAAAATTTAGCTAGACGCAAGGTAGTAGACAAAACTCGGAAGAAGCAACTTCTAGATCATTATCACACTGAGATGGTAGAGAAAGGTACTCAAGATCTGCGCTCCTGTAAGTATTGCGTAAAAGTATTCCGACCCAATAGCTCTGAAGAGCTTGTTAAAGCACACATTTTGGTACATTTGTTCGCGACCGCCGAAGATGCAAAAGATGTAATTCCAGACTCTTTGGATCTCAGTAAGCATCTAAGCTCAACACCTTGCTATGTATGTTCCTTCTGTAACATGCCCAAGTCGACAACTGCAGAGTTGAAACGCCACTTGAATTATTACTGCTGTACATTTGCCAATAAGTTTCACATCAAAATTCGAGATCGCAGACGACATGGAAAAACACGTGGTAAGCCATTTACATGTAAAATCTGTGGAGATAACAAACCATATAAGGGGAAAGAATTCAAAAAACACATGAAAGAAAATCACCCCAAGCTGATATTCAACTGTCGTCATTGCCCAATGTTCTTCTTAACAAGACATGATATGCAACACCACATTCATAAGAAACATGTGGGTGGAAATGTAGGAGAGAAAACGACACATGAAGAAAACAGTGGAAATATAGAAGAGGAAACGACACTTGAAGAAAACAGTGGAAAcataaaagagacaaaaagCAAACCAAAAGTAAAGAGGGAACAAACACCCATGTTATGTGAATTCTGTTCACGAGAATGTAAGACTAAAAATGGTTATCGAACGCATGTGATGAAAGTACATCTCTCAAAACCCTCGAGTGAAACTGGAGGTTTTAAATCGAGTAAAAAACAAAGTGATGTAAAAAGAACAATCCTTCACTGTAAAATTTGTGATAAGAAACTTGCTTTCAAGGATGGTCAACCTGCATTGGACTTCCACATCATGAGACACAATTCACCAAATGGTAAAATAATGTGTTGTAACAGAGAATACGTTACTTATATCAAATACAACAAACATATTCAGAGTCACTCGAGAATTTGGACATGTAAGATATGTCAAGTGCCATTCGAGAGTCAAGTTCTGTTAAGTGATCACCTTGGTGAGAAACATGCGAAGTGTGAAGAATGCGGTTATTTATCCAAAAACTATACAGAATATTTAAAACACAGGCAGTCATGTCATGGTGACCAAAGTACTTGTATGGtttgtaatattatgttcaGTACAAAGAAAGAGTTGGTCATGCATCGTAAACAATATCACTGGGAGGATCTTATTGCTCAACCAGCCAAAGGAGATTTGCCAGAACCAGTTCTATGTTGTGGGAAGAAATTCACAAGGAAAGTAAACTTGAACACTCACAGGTCCAAACATCAGGACACAGTTTGTAAAACATGTGGTGATGTATTGAAAAGTAAGTTGGCTCTCTTGTCACATAATGCTACTCACCACAGAACAAGCGTATTATGTTCCTACTGCAACAAAAGCTTTTGTAATGCTGATTCCTTGAAATATCACATGTTAAAACATACGCAAGGACGTCAATTTAAATGTGCTTGTGGACTCAGCTTCTACACAGAATCAGATATGAATAAGCATCTGAAAACTAGAAAGAAACCTTGTTTAGGTAAAATGATTGGAGATGCTAATGTAGGCATTGAAGATGAAAATATGGAATGGACTGAAGAAGTTGTGACAGAGTCTTAA
- Protein Sequence
- MDLKMNYSDDNDDSTVIITVKEEWDSEKEDEYIESQHMIEEYEEEEIDQNVEEEEEEEEGEQETEDQQQIQNQEQQQSLLDHEEKSDKKVTKPDQSKNRTDNVFIDLFQHPFVVEYLEYVQSKDSMQDEESNMDTDCETFVNPKGVCRLCTKTDQTIFMRLFYNNETLTPIASKIAYLMGQEKVEQDLLPQQICLGCSELVNSSYNAIKRFSESHRILSEVVEEFKNKNHMFYKKKEPHQKHRLFLKMHDKSYEFYPKSSSTSRDERGNEANSYSCIQCNSTFPTQAELLTHKSIHDNCDEDSSIAGSSIKQEVHDSDYDSEHNSQSDPNTIEHESAKDELENLARRKVVDKTRKKQLLDHYHTEMVEKGTQDLRSCKYCVKVFRPNSSEELVKAHILVHLFATAEDAKDVIPDSLDLSKHLSSTPCYVCSFCNMPKSTTAELKRHLNYYCCTFANKFHIKIRDRRRHGKTRGKPFTCKICGDNKPYKGKEFKKHMKENHPKLIFNCRHCPMFFLTRHDMQHHIHKKHVGGNVGEKTTHEENSGNIEEETTLEENSGNIKETKSKPKVKREQTPMLCEFCSRECKTKNGYRTHVMKVHLSKPSSETGGFKSSKKQSDVKRTILHCKICDKKLAFKDGQPALDFHIMRHNSPNGKIMCCNREYVTYIKYNKHIQSHSRIWTCKICQVPFESQVLLSDHLGEKHAKCEECGYLSKNYTEYLKHRQSCHGDQSTCMVCNIMFSTKKELVMHRKQYHWEDLIAQPAKGDLPEPVLCCGKKFTRKVNLNTHRSKHQDTVCKTCGDVLKSKLALLSHNATHHRTSVLCSYCNKSFCNADSLKYHMLKHTQGRQFKCACGLSFYTESDMNKHLKTRKKPCLGKMIGDANVGIEDENMEWTEEVVTES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00443442; iTF_00443476;
- 90% Identity
- iTF_00443442; iTF_00443476;
- 80% Identity
- -