Dcit004419.2
Basic Information
- Insect
- Diaphorina citri
- Gene Symbol
- -
- Assembly
- GCA_000475195.1
- Location
- CP125322.1:23359997-23363349[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.089 7.8 8.6 0.3 1 23 273 295 273 295 0.94 2 14 4.4 3.9e+02 3.2 2.0 2 14 375 387 375 399 0.85 3 14 0.47 42 6.3 0.3 1 21 427 447 427 448 0.95 4 14 1.2 1.1e+02 5.0 1.3 1 23 475 499 475 499 0.91 5 14 0.41 36 6.5 2.9 3 23 576 597 575 597 0.97 6 14 8 7.1e+02 2.4 0.2 2 11 623 632 622 636 0.79 7 14 1.1 1e+02 5.1 0.2 6 23 657 674 657 674 0.98 8 14 0.045 4 9.5 0.1 2 23 679 701 678 701 0.89 9 14 0.44 38 6.4 3.0 2 23 703 725 703 725 0.97 10 14 0.0029 0.26 13.2 1.0 2 23 730 752 729 752 0.95 11 14 0.00078 0.068 15.0 1.7 6 23 772 789 772 789 0.99 12 14 1.9 1.7e+02 4.4 0.7 2 23 793 814 792 815 0.93 13 14 2.1e-05 0.0018 20.0 3.4 3 23 821 841 820 841 0.98 14 14 0.075 6.6 8.8 0.0 6 22 851 867 850 867 0.96
Sequence Information
- Coding Sequence
- ATGGATCTCAAAATGAATTATTcagatgataatgatgattcaACTGTTATCATAACAGTAAAAGAAGAATGGGACtctgaaaaagaagatgaatatATTGAAAGTCAACATATGATTgaggaatatgaagaagaagaaatagatcaaaatgttgaggaggaggaagaggaagaaggagaacaagaaacaGAAGATCAGCAGCAAATACAAAATCAGGAGCAACAACAATCACTATTGGATCATGAAGAAAAATCAgacaaaaaagtaacaaaaccTGACCAATCAAAAAATAGAACAGATAATGTTTTCATAGACTTATTTCAGCATCCATTTGTTGTGGAATATTTAGAGTATGTTCAATCAAAAGATTCAATGCAAGATGAGGAATCCAATATGGACACTGACTGTGAAACCTTTGTCAATCCCAAGGGTGTATGCAGACTTTGTACTAAAACTGATCAAACTATTTTCATGAGGCtattttataataatgaaaCCTTAACCCCTATTGCAAGTAAAATTGCATATTTAATGGGTCAAGAGAAGGTTGAGCAAGATCTGTTACCACAACAAATTTGTCTGGGATGTTCTGAATTGGTCAACTCAAGTTATAATGCTATTAAACGTTTCTCTGAATCTCATCGCATTCTCTCTGAAGTaattGAGGAgttcaaaaacaaaaatcacatGTTTTACAAGAAAAAAGAGCCACATCAGAAGCATCGTTTGTTTTTGAAGATGCATGACAAGAGCTATGAGTTTTATCCTAAGTCTTCTTCTACATCAAGGGATGAaagGGGAAACGAGGCAAACTCTTACAGCTGTATCCAATGTAACAGTACATTCCCTACGCAGGCTGAACTCTTAACACACAAGTCCATACATGATAATTGTGATGAGGACTCCAGTATAGCAGGCTCAAGCATCAAGCAAGAGGTTCATGATAGTGATTATGACAGTGAACACAATAGTCAATCTGATCCTAACACTATTGAGCATGAATCTGCCAAAGACGAACTTGAAAATTTAGCTAGACGCAAGGTAGTAGACAAAACTCGGAAGAAGCAACTTCTAGATCATTATCACACTGAGATGGTAGAGAAAGGTACTCAAGATCTGCGCTCCTGTAAGTATTGCGTAAAAGTATTCCGACCCAATAGCTCTGAAGAGCTTGTTAAAGCACACATTTTGGTACATTTGTTCGCGACCGCCGAAGATGCAAAAGATGTAATTCCAGACTCTTTGGATCTCAGTAAGCATCTAAGCTCAACACCTTGCTATGTATGTTCCTTCTGTAACATGCCCAAGTCGACAACTGCAGAGTTGAAACGCCACTTGAATTATTACTGCTGTACATTTGCCAATAAGTTTCACATCAAAATTCGAGATCGCAGACGACATGGAAAAACACGTGGTAAGCCATTTACATGTAAAATCTGTGGAGATAACAAACCATATAAGGGGAAAGAATTCAAAAAACACATGAAAGAAAATCACCCCAAGCTGATATTCAACTGTCGTCATTGCCCAATGTTCTTCTTAACAAGACATGATATGCAACACCACATTCATAAGAAACATGTGGGTGGAAATGTAGAAGAGAAAACGACACATGAAGAAAACAGTGGAAATATAGAAGAGGAAACGACACTTGAAGAAAACAGTGGAAAcataaaagagacaaaaagCAAACCAAAAGTAAAGAGGGAACAAACACCCATGTTATGTGAATTCTGTTCACGAGAATGTAAGACTAAAAATGGTTATCGAACGCATGTGATGAAAGTACATCTCTCAAAACCCTCGAGTGAAACTGGAGGTTTTAAATCGAGTAAAAAACAAAGTGATGTTAAAAGAACAATCCTTCACTGTAAAATTTGTGATAAGAAACTTGCTTTCAAGGATGGTCAACCTGCATTGGACTTCCACATCATGAGACACAATTCACCAAATGGTAAAATAATGTGTTGTAACAGAGAATACGTTACTTATATCAAATACAACAAACATATTCAGAGTCACTCGAGAATTTGGACATGTAAGATATGTCAAGTGCCATTCGAGAGTCAAGTTCTGTTAAGTGATCACCTTGGTGAGAAACATGCGAAGTGTGAAGAATGCGGTTATTTATCCAAAAACTATACAGAATATTTAAAACACAGGCAGTCATGTCATGGTGACCAAAGTACTTGTATGGtttgtaatattatgttcaGTACAAAGAAAGAGTTGGTCATGCATCGTAAACAATATCACTGGGAGGATCTTATTGCTCAACCAGCCAAAGGAGATTTGCCAGAACCAGTTCTATGTTGTGGGAAGAAATTCACAAGGAAAGTAAACTTGAACACTCACAGGTCCAAACATCAGGACACAGTTTGTAAAACATGTGGTGATGTATTGAAAAGTAAGTTGGCTCTCTTGTCACATAATGCTACTCACCACAGAACAAGCGTATTATGTTCCTACTGCAACAAAAGCTTTTGTAATGCTGATTCCTTGAAATATCACATGTTAAAACATACGCAAGGACGTCAATTTAAATGTGCTTGTGGACTCAGCTTCTACACAGAATCAGATATGAATAAGCATCTGAAAACTAGAAAGAAACCTTGTTTAGGTAAAATGATTGGAGATGCTAATGTAGGCATTGAAGATGAAAATATGGAATGGACTGAAGAAGTTGTGACAGAGTCTTAA
- Protein Sequence
- MDLKMNYSDDNDDSTVIITVKEEWDSEKEDEYIESQHMIEEYEEEEIDQNVEEEEEEEGEQETEDQQQIQNQEQQQSLLDHEEKSDKKVTKPDQSKNRTDNVFIDLFQHPFVVEYLEYVQSKDSMQDEESNMDTDCETFVNPKGVCRLCTKTDQTIFMRLFYNNETLTPIASKIAYLMGQEKVEQDLLPQQICLGCSELVNSSYNAIKRFSESHRILSEVIEEFKNKNHMFYKKKEPHQKHRLFLKMHDKSYEFYPKSSSTSRDERGNEANSYSCIQCNSTFPTQAELLTHKSIHDNCDEDSSIAGSSIKQEVHDSDYDSEHNSQSDPNTIEHESAKDELENLARRKVVDKTRKKQLLDHYHTEMVEKGTQDLRSCKYCVKVFRPNSSEELVKAHILVHLFATAEDAKDVIPDSLDLSKHLSSTPCYVCSFCNMPKSTTAELKRHLNYYCCTFANKFHIKIRDRRRHGKTRGKPFTCKICGDNKPYKGKEFKKHMKENHPKLIFNCRHCPMFFLTRHDMQHHIHKKHVGGNVEEKTTHEENSGNIEEETTLEENSGNIKETKSKPKVKREQTPMLCEFCSRECKTKNGYRTHVMKVHLSKPSSETGGFKSSKKQSDVKRTILHCKICDKKLAFKDGQPALDFHIMRHNSPNGKIMCCNREYVTYIKYNKHIQSHSRIWTCKICQVPFESQVLLSDHLGEKHAKCEECGYLSKNYTEYLKHRQSCHGDQSTCMVCNIMFSTKKELVMHRKQYHWEDLIAQPAKGDLPEPVLCCGKKFTRKVNLNTHRSKHQDTVCKTCGDVLKSKLALLSHNATHHRTSVLCSYCNKSFCNADSLKYHMLKHTQGRQFKCACGLSFYTESDMNKHLKTRKKPCLGKMIGDANVGIEDENMEWTEEVVTES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00443443;
- 90% Identity
- iTF_00443443;
- 80% Identity
- -