Basic Information

Insect: Diaphorina citri
Gene Symbol: su(Hw)
Assembly: GCA_000475195.1
Location: CP125332.1:44328677-44339419[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00042 0.037 15.9 0.5 3 21 104 122 102 123 0.94

2 13 9.1e-07 8e-05 24.3 1.2 1 23 177 200 177 200 0.97

3 13 0.0001 0.0091 17.8 0.5 1 23 206 228 206 228 0.97

4 13 6.6e-05 0.0058 18.4 3.1 1 19 234 252 234 254 0.97

5 13 1.8e-07 1.6e-05 26.5 0.3 1 23 266 288 266 288 0.97

6 13 0.0014 0.13 14.2 1.1 1 23 298 320 298 320 0.98

7 13 0.00011 0.0099 17.7 1.0 1 23 361 383 361 383 0.99

8 13 3.3e-05 0.0029 19.4 0.8 1 23 389 411 389 411 0.99

9 13 9.3e-06 0.00082 21.1 2.1 1 23 417 439 417 439 0.96

10 13 5.4e-05 0.0047 18.7 2.7 1 23 445 468 445 468 0.96

11 13 4.9e-05 0.0043 18.8 2.6 1 19 474 492 474 496 0.92

12 13 2.7e-06 0.00024 22.8 1.9 1 23 502 524 502 524 0.98

13 13 1.9e-05 0.0017 20.1 1.7 2 23 531 553 530 553 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00042	0.037	15.9	0.5	3	21	104	122	102	123	0.94
2	13	9.1e-07	8e-05	24.3	1.2	1	23	177	200	177	200	0.97
3	13	0.0001	0.0091	17.8	0.5	1	23	206	228	206	228	0.97
4	13	6.6e-05	0.0058	18.4	3.1	1	19	234	252	234	254	0.97
5	13	1.8e-07	1.6e-05	26.5	0.3	1	23	266	288	266	288	0.97
6	13	0.0014	0.13	14.2	1.1	1	23	298	320	298	320	0.98
7	13	0.00011	0.0099	17.7	1.0	1	23	361	383	361	383	0.99
8	13	3.3e-05	0.0029	19.4	0.8	1	23	389	411	389	411	0.99
9	13	9.3e-06	0.00082	21.1	2.1	1	23	417	439	417	439	0.96
10	13	5.4e-05	0.0047	18.7	2.7	1	23	445	468	445	468	0.96
11	13	4.9e-05	0.0043	18.8	2.6	1	19	474	492	474	496	0.92
12	13	2.7e-06	0.00024	22.8	1.9	1	23	502	524	502	524	0.98
13	13	1.9e-05	0.0017	20.1	1.7	2	23	531	553	530	553	0.95

Sequence Information

Coding Sequence: ATGTCCACGAGAGCCATGCGGAGTAGTCAGAGAAACAAGAAGTtggagatgaaggaagagacaGCAGAAGTTGAAGACAATACGGAGAGTCTAATGTTGGTtgtcgaagaagaaggagaagaactggagGGTGAGGCTCAAGCCGAGCAGGAGGAAGTTGAACAAGAGGAAACAAACGAGGCTGAGGGTGATGGTAATGAAGAACCAAAGGAAGAATTGTCCGATGCTGATGAAGGAATGCCAATAGATATCTACGAGTTTCCGAATGAAGATGACGCTGTGGGCGAGAAAACTGTGCCTGGACACTTGTGTAAGGGTTGCTACCGTATCTTCACCTCGCAGGGGGGACTCAAGCGTCACTTGAGAGCATGTCCTAATATTGCGGACAAGTTGCCGGTGGACAAGTTGGACCTCCTGGAGCAGTCCACGGAAATGATGGatGATACAATGGCGGCTGAGGAGTTTGAGCGGGAAGGCATGTGTCATTGTTGTGGTGAAGATATTGACACGGCTCATGTGGGTGGCGAGTTCTCGTGCGATGATTGCGAGAAGACATTCAAGCTCAAGTCTAGTCTGGAGAGACATCGCCGCGTTATTCACTCGGAAGGGACCACATTTGATTGTCCCGAGTGTAATGCCCGCTGTCCGGACAAGGGAACTCTGGCCCGCCACATGTATACGCACACAGGTCTAAAACCATACGAGTGTCCTACTTGTCACAAGGAGTTCTCACGTCGCTATCATTTAGTAAGACATAACTATCAAACTGGATGTAACGGAGCTGCCAGACCTACTTTCCCTTGTCAGGTGTGTGGCCGCGTATTCAACCGCAAGGACAACCTGCGCGAACATCTGCGCGCGCATGCGGGCGAAACCAAGCGCAAGAAGAAATTCAAGTGTGACAAATGCGAGAAGCAATTCTACGGGTTAACCTTGTTGAGAATACATGAGCGACTACACGAGGAGGGCCATGGACTAAGTATAGATGAACAAGTTATTGAAGAAATCGGCAAGAATACTGGACGTGGAAGACCTTCTGTGAAGAAGTTACTGAAAGGCATCGCTCCAActGAGAAACTGTACGAGTGTGACATTTGTAAGAACCGGTTTCCATCTAGTGGAGCTATGAAGAAACATCGCAGGAAACACACCGGGGAGCGACCCTATGAATGTAAAGAGTGTTACGCCAGATTTGCCGCCAAAGAGACTCTGAACCGCCACATGAAGACACACTCAGGCGTCAAACCCCATGTGTGTGAATACTGCGAGAAGGCATTCATACAGGCGTCCCAGCTCAAAGCTCACATGTTCCATCATACAGGTGAAAATGGGCACACCTGCGAGCTGTGTAACAAAACGTTCAATCGCAAGGCCCGTCTGGAACTACACATGAAGTACATTCACGAGGGTGCCGACCCCTACCAGTGCGATATTTGCCGCAAGACGTTCATCCGCAAAGAAGATCTAACGCGTCACTGTTTGCTGCACACGGGCGTCAAACCACACAAGTGTCCGATTTGCACGAAAGGGTTCACCATGAAATCGTCGCTCAAGATTCACTTGTTGACCCATACCAAGGAGCCGCCCAAGTCGTGCGAGGTGTGTGGACGCGCCTTCATTCGTCAGGACTGTCTCATCCGGCACCTCCGCCAGAAGCACCGTTCACATCTGGACGAGGTGTTGGCTCAGGGGGACAAGAAGAAACTGGAAGCTCAACTGCTGGCAGCGGCTGCTACGGAGCTAACCTCGGTTCTGGAggatggggaggaggagggagacgAGGGCGAAGGTGGAAATGAGAGCAGTGGAGATTCTCGCCGACCTCCCCGTGTTCTATCCGAGAAAGAACTGATCGAGTCTATGCAAGAATTACTCTCCCTACTTATAGACGAGGAATCACTCACCGCCTATGGATGGCCACACACCCCCGTCGAGACCGTCATTCAGTCCGTCATTAGCCAATGTGGTCACATGCCGGCTACAGAGTCGGAAGAAATGTCGTTTGCTGACAGCCTCCGTGAGAATGCCAAGCTACTATTCAGTGTGGTGACGGATGATGCTGCTATTAAACAACTCCTCAACAATCAAACCGTAGACCAGGTCATTCTACACATGCTCCGATTAGCCAAAAGCTAA
Protein Sequence: MSTRAMRSSQRNKKLEMKEETAEVEDNTESLMLVVEEEGEELEGEAQAEQEEVEQEETNEAEGDGNEEPKEELSDADEGMPIDIYEFPNEDDAVGEKTVPGHLCKGCYRIFTSQGGLKRHLRACPNIADKLPVDKLDLLEQSTEMMDDTMAAEEFEREGMCHCCGEDIDTAHVGGEFSCDDCEKTFKLKSSLERHRRVIHSEGTTFDCPECNARCPDKGTLARHMYTHTGLKPYECPTCHKEFSRRYHLVRHNYQTGCNGAARPTFPCQVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHEEGHGLSIDEQVIEEIGKNTGRGRPSVKKLLKGIAPTEKLYECDICKNRFPSSGAMKKHRRKHTGERPYECKECYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCEVCGRAFIRQDCLIRHLRQKHRSHLDEVLAQGDKKKLEAQLLAAAATELTSVLEDGEEEGDEGEGGNESSGDSRRPPRVLSEKELIESMQELLSLLIDEESLTAYGWPHTPVETVIQSVISQCGHMPATESEEMSFADSLRENAKLLFSVVTDDAAIKQLLNNQTVDQVILHMLRLAKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00443099;
90% Identity: iTF_00443099;
80% Identity: -