Dcit011950.1
Basic Information
- Insect
- Diaphorina citri
- Gene Symbol
- -
- Assembly
- GCA_000475195.1
- Location
- CP125324.1:31936416-31940267[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0068 0.6 12.1 2.5 2 19 179 196 178 199 0.92 2 23 0.0003 0.026 16.3 4.5 2 23 210 231 209 231 0.97 3 23 0.00066 0.058 15.3 2.7 1 23 237 259 237 259 0.99 4 23 0.00029 0.025 16.4 5.7 1 23 265 287 265 288 0.96 5 23 0.00012 0.011 17.6 4.8 1 23 294 316 294 316 0.98 6 23 4.6e-06 0.00041 22.0 1.4 1 23 322 344 322 344 0.98 7 23 9 7.9e+02 2.3 4.1 2 23 360 382 359 382 0.94 8 23 1.3 1.1e+02 4.9 0.1 1 11 392 402 392 405 0.91 9 23 4.2e-05 0.0037 19.0 1.7 1 23 506 528 506 528 0.97 10 23 1.8e-05 0.0016 20.2 0.7 1 22 536 557 536 559 0.90 11 23 4.7e-06 0.00041 22.0 1.3 1 23 565 588 565 588 0.93 12 23 0.00032 0.028 16.3 1.1 1 23 595 617 595 617 0.98 13 23 0.00026 0.023 16.5 0.5 1 23 622 644 622 644 0.98 14 23 0.00015 0.013 17.3 0.6 2 23 654 676 653 676 0.94 15 23 0.07 6.2 8.9 0.2 1 23 679 707 679 707 0.92 16 23 0.14 13 7.9 0.6 2 23 717 738 716 738 0.96 17 23 4.1e-05 0.0036 19.1 2.3 2 22 745 765 744 765 0.96 18 23 1.2e-05 0.0011 20.7 3.0 2 23 888 910 887 910 0.96 19 23 6.3e-07 5.5e-05 24.8 3.3 2 23 947 969 946 969 0.97 20 23 2.2e-06 0.0002 23.0 1.3 2 23 1006 1028 1005 1028 0.96 21 23 2.2e-07 1.9e-05 26.2 1.1 2 23 1104 1126 1103 1126 0.96 22 23 3.2e-06 0.00028 22.6 1.9 2 23 1154 1176 1153 1176 0.96 23 23 2.4e-07 2.1e-05 26.1 2.7 3 23 1217 1238 1216 1238 0.98
Sequence Information
- Coding Sequence
- ATGATGGATGCGGAACATGCTGAGATTTCAgcaaaaagaaaacatgaagACACTGACAATGACTTGGTCagtgtgaagaaaataaagacagaAGTTGAAGAAAGTGGCCCTCAGAATGGTGAGGTGACTGAGGAATCAGTTGGTGAAGGAAAACAACTGTCCAATGGTTTAGACCAAAGTGAGGATGAATCATTGCAAGGTTCTGATGCTGATAAGACTCTACTGAACAATAGTGGAGAGCTTAGTGAAGATGAGAGTGGTTCTGATGATGAAAACGATAGTGATGAATCTGACGAggaaagtggagaagaagaggaagatgaacaTGATGGACTTAAGATAATGTGTGATGATGATGAactgggagaagaagaagaagaggacaatgGTGAATATCATCTCCTGGAAGATGAAGATATTGGATTAGGTGTAGAAGCATGTCTaggagatgaagatgatgactTGGAAATGACAAATGGGATGGAaagtttattttcaaacaatccTTACTCCAATGATGCAAACACTGACTTGCAGTGTAAGAATTGTTTCAAAGTATTTGCAAGGAAATCCTATTTACGGGGTCACAGCTGTTCTAAAGATTTGCAAATCAACAACAAGGCACTCAAGTGCAAATACTGCAACAGACGATACTCACACAAAATCAATTTGAGACTTCATCTCAAGCTCCACAACAATCCAAAACAATTCCAATGCCATGTTTGTCTCAAGTACTTGTCATCAAGTAGTAGCCTCAAAGTTCATGTCAAAACACATTCAAATGAGAAAGCATTCAAGTGTGAGCATTGCTCAACAGCTTTCAACCAGAAAGTTCATCTCAATGATCACATCCTCAGTCATCACACCAAGGTTCGTCCTTACAACTGTCATCTGTGCAATAAAACCTATGTGTCCAAGAGTGTACTTAAGAAACATTTGAAGAAACATCTCGGCCTCTATAAGTACGCCTGTGAGGTTTGTTCAAAACGGTTCTTTGAGCGATCTGCTCTCAAGAAACACATGAGGACTCATACTTCGAATTTCCCGCTCAACAAATTGAAAAGTGAAGAACCACTTCAGTGTCATGCTTGTCTTACGTATTTCCATTTCAAGTACAAGTTGATCACTCATCAGATGTTGGAACACGGCCTTTGTCGAGAAAATGAAACTTGTTACCAATGTCCATTGTGTGATATCAAGTTTAATATTAGTGCCATGGATGATAAAGAACCACTTCCCCCTTCAATCAAACAAGAGAAAATATCGAAGCAAGAGACAAGAAGTGATGATAATGACCATCTTCCTATCCAAGTCAAGCAAGAGAAAATTTCGGACCTTGAGAGCAGTGGTGAACCAAATTCAGAACAGCAAACCACTGTTAACAACTTGGTTGAGCCAGACTACCCAACGCATCTGAATGACCATAAAACGATATTTGCCAACCTGAAAATCACGACCGCCAACATGCAAATGATTATCAGTGAACACATCAAGTCTCATGAATATGTTGAAAATCACATGTGTGAACTTTGCTACAAAGTGTTTGAGTCTAGAGAGAATCTGATGCGTCATTTGAAAATCCATGACGATAAGGAGAGCAAACGGTTCAAATGTGAACAATGTGACAAGAGATTTTCATCAAACGCTGAGCTGAACAAGCATAGCAGTGCAATTCATCAACGACTCAAACTTCACGAGTGTGATCTCTGTGGCAAGAATTTCTCACAGAGGAATAATCTGAAGCGACATTTAGAAGAAGTACATCGGACAGATGGTATGAAGTTTGAGTGTTACGTGTGTAGCAAGGTATTAGCGACGAGTCATAGCTTGAAACGACATCTCCTCATTCATAATGGACCCAAATATACGTGTGAAATATGTGCAAAAGAATTCACACGTGTCTATGAGCTGAACATACACAAGAAATTACATGAGGATGAAAGTATGGCTAATCAGCTCAAATGTGAATTCTGTGGCAAAGTCTTCTTGAAGAAATCCAACTTGAAAGCTCACATAGAGAACAATCATCTGGATTACAGTTGTCTGGAGTGCAAGGCTGTTGGTGAAGAAATATCGTTTGACACGAAGAAAAATTTGCTTCTCCATTTGAAGACGAAACACAAGAATGTCATCAGCAATGTGTATTTGACCTGtcttatttgttttaaaacatTCCTGACGGAAGTAGACCTCGGTAAACACACGAAGATGCATATGGATGATAATCAGATCCAGTGCCGATTCTGTAATAAATATTTCTCGAGAAACTATAACCTGAAACAGCACATGAAGACGTGCACTAAGAATGTATCTAATGGCATTCTGAACTGTGATGATAATGAAGGAGAATATAATGGACATGGCAGTCATGAGGAgaatgaagatgatgaggatTATGACGACATGAATGAGATGATGCTCGTACCAGTCATCAAAAtggaactgaaagaagaaaacgaagagaatgaggacagggaAAATCAATCCGAAGAAGAAAACTACACCCCTGTCCCGGAAGTTAGTATTAAAAGGGAAACTGATCCGCTCTCTGTGGAAGACATAATCAGCGCTGGTGAAGTATCCATCACACCCATTCCACAATCCAATACCAATAATCATGGCTCGGGTTCCACGAATAACACCCAAGCCAACAAGATTATCCAGTGTCACATATGTTTGAAAACATTCGCCAAGAAGGACAGCTTGAAGAAACATATGAAGGTATTCCACACGTACATTTCGCCTGACGCTATCAAAGAGGAGTCTGGTGAAGGGAAACCAAACATCCTGGAAGTTATCTTGCAGGAGGGCAAGGTGCCCAATAACAACGCCATCATTCAGTGTCGGATCTGTAGCAAGACATTCACACGCAAGGATAGTCTGAGGAAGCACATGAGACGCTTCCATATTATCAATGATACCAACGTGAAGAAAGAATTCACCGAAGGACAAATCAATCGCAATATGCTGGATGTGATCCTCAAGGAAAGTGGTCATGAGATCAAGAGCCGCATTCCGTGTGAACTTTGCTACAAAACCTTCACGAGGAAAGATTCGCTTCGGAAGCACATGAAGATCTTTCACACGAGAAGGAACCCAAGCGCCAACTCAGGGAACTCAGAAACATCCGCCCCACCCGCGGTGAAATTAGAACaaaacgaaggagaaaaagtggaaaacagTACCAGTGTGGAGAACAGTACCAGTGTGGAGAACAGTACCAGTGTGGAGAACAGTGCCAATGTAGAGAATACCAGCAGCGTGGACAATAGAACCAGCGTCGGTCCCGTTGTCCCCATTGATAGAATACCATGCACCCTGTGCGACAAAACATTCACTAGGAAAGACAGTCTCAAGAAGCACATTCGCATCTTTCACACACAGAATCAACCGCAACACACGAACGTCATCGAGGTGGCGCTCGGTGCGCGAGCGAACGCTGCGTTCATTGACCGCATCCGGTGTGAGCTATGCGACAAATCCTTCACTAGGAAAGACAGTCTGAAGAAACACAACCGAATCTTCCACGGTGGTGCGGATCCGAAAGTGATGGACGAGCAGATGGCGCGCGGGAGTGCTGACTTCCTCGAAGTAGTCCTCAATGAGGATGGCGAAGGAGAGCCAGTCAGCATAACCAATGAGATCCTGTGCAAGATATGTAACCGGACGTTCACGAGGAATTATAATCTGAAGAAGCATATGAAGACGGTACATAAGATTGATGATAATGAGCCGTACTTTGCTTATGAGAACACGGAGTATgatgaggaagagggagagatggagggggaGGAGTTTGGCAGTTTGAGCAATAGTATGTTGGAGGTGATTATTAGAGATGATGAGCAATAA
- Protein Sequence
- MMDAEHAEISAKRKHEDTDNDLVSVKKIKTEVEESGPQNGEVTEESVGEGKQLSNGLDQSEDESLQGSDADKTLLNNSGELSEDESGSDDENDSDESDEESGEEEEDEHDGLKIMCDDDELGEEEEEDNGEYHLLEDEDIGLGVEACLGDEDDDLEMTNGMESLFSNNPYSNDANTDLQCKNCFKVFARKSYLRGHSCSKDLQINNKALKCKYCNRRYSHKINLRLHLKLHNNPKQFQCHVCLKYLSSSSSLKVHVKTHSNEKAFKCEHCSTAFNQKVHLNDHILSHHTKVRPYNCHLCNKTYVSKSVLKKHLKKHLGLYKYACEVCSKRFFERSALKKHMRTHTSNFPLNKLKSEEPLQCHACLTYFHFKYKLITHQMLEHGLCRENETCYQCPLCDIKFNISAMDDKEPLPPSIKQEKISKQETRSDDNDHLPIQVKQEKISDLESSGEPNSEQQTTVNNLVEPDYPTHLNDHKTIFANLKITTANMQMIISEHIKSHEYVENHMCELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRHLEEVHRTDGMKFECYVCSKVLATSHSLKRHLLIHNGPKYTCEICAKEFTRVYELNIHKKLHEDESMANQLKCEFCGKVFLKKSNLKAHIENNHLDYSCLECKAVGEEISFDTKKNLLLHLKTKHKNVISNVYLTCLICFKTFLTEVDLGKHTKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCTKNVSNGILNCDDNEGEYNGHGSHEENEDDEDYDDMNEMMLVPVIKMELKEENEENEDRENQSEEENYTPVPEVSIKRETDPLSVEDIISAGEVSITPIPQSNTNNHGSGSTNNTQANKIIQCHICLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQCRICSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIKSRIPCELCYKTFTRKDSLRKHMKIFHTRRNPSANSGNSETSAPPAVKLEQNEGEKVENSTSVENSTSVENSTSVENSANVENTSSVDNRTSVGPVVPIDRIPCTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTRKDSLKKHNRIFHGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITNEILCKICNRTFTRNYNLKKHMKTVHKIDDNEPYFAYENTEYDEEEGEMEGEEFGSLSNSMLEVIIRDDEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00443069; iTF_00443072; iTF_00443079;
- 90% Identity
- iTF_00443072;
- 80% Identity
- iTF_00443069;