Dcit011830.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Diaphorina citri
Gene Symbol
-
Assembly
GCA_000475195.1
Location
CP125324.1:30651600-30655444[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 23 0.0066 0.58 12.1 2.5 2 19 178 195 177 198 0.92
2 23 0.00029 0.026 16.4 4.5 2 23 209 230 208 230 0.97
3 23 0.00064 0.056 15.3 2.7 1 23 236 258 236 258 0.99
4 23 0.00028 0.025 16.4 5.7 1 23 264 286 264 287 0.96
5 23 0.00012 0.01 17.6 4.8 1 23 293 315 293 315 0.98
6 23 4.5e-06 0.0004 22.1 1.4 1 23 321 343 321 343 0.98
7 23 8.7 7.7e+02 2.3 4.1 2 23 359 381 358 381 0.94
8 23 1.3 1.1e+02 4.9 0.1 1 11 391 401 391 404 0.91
9 23 4.1e-05 0.0036 19.1 1.7 1 23 504 526 504 526 0.97
10 23 1.8e-05 0.0016 20.2 0.7 1 22 534 555 534 557 0.90
11 23 4.5e-06 0.0004 22.1 1.3 1 23 563 586 563 586 0.93
12 23 0.00031 0.027 16.3 1.1 1 23 593 615 593 615 0.98
13 23 0.00026 0.023 16.6 0.5 1 23 620 642 620 642 0.98
14 23 0.00015 0.013 17.3 0.6 2 23 652 674 651 674 0.94
15 23 0.068 6 8.9 0.2 1 23 677 705 677 705 0.92
16 23 0.018 1.6 10.7 0.5 2 23 715 736 714 736 0.97
17 23 4e-05 0.0035 19.1 2.3 2 22 743 763 742 763 0.96
18 23 3.8e-05 0.0033 19.2 1.2 2 21 886 905 885 906 0.95
19 23 6.1e-07 5.4e-05 24.8 3.3 2 23 917 939 916 939 0.97
20 23 2.2e-06 0.00019 23.1 1.3 2 23 976 998 975 998 0.96
21 23 2.1e-07 1.9e-05 26.3 1.1 2 23 1074 1096 1073 1096 0.96
22 23 3.1e-06 0.00027 22.6 1.9 2 23 1124 1146 1123 1146 0.96
23 23 2.4e-07 2.1e-05 26.1 2.7 3 23 1187 1208 1186 1208 0.98

Sequence Information

Coding Sequence
ATGATGGATGCGGAACATGCTGAGATTTCAgcaaaaagaaaacatgaagACACTGACAATGACTTGGTCagtgtgaagaaaataaagacagaAGTTGAAGAAAGGGGCCCTCAGAATGGTGAGGTGACTGAGGAATCAGTTGGTGAAGGAAAACAACTGTCCAATGGTTTAGACCAAAGTGAGGATGAATCATTGCAAGGTTCTGATGCTGATAAGACTCTACTGAACAATAGTGGAGAGCTTAGTGAAGATGAGAGTGGTTCTGACGATGAAAACGATAGTGATGAATCTGACGAggaaagtggagaagaagaggaagatgaacaTGATGGACTTAAGATAATGTGTGATGATGATGAactgggagaagaagaagaggacaatgGTGAATATCATCTCCTGGAAGATGAAGATATTGGATTAGGTGTAGAAGCATGTCTaggagatgaagatgatgactTGGAAATGACAAACGGGATGGAaagtttattttcaaacaatccTTACTCCAATGATGCAAACACTGACTTGCAGTGTAAGAATTGTTTCAAAGTATTTGCAAGGAAATCCTATTTACGGGGTCACAGCTGTTCTAAAGATTTGCAAATCAACAACAAGGCACTCAAGTGCAAATACTGCAACAGACGGTACTCACACAAAATCAATTTGAGACTTCATCTCAAGCTCCACAAAAATCCAAAACAATTCCAATGCCATGTTTGTCTCAAGTACTTGTCATCAAGTAGTAGCCTCAAAGTTCATGTCAAAACACATTCAAATGAGAAAGCATTCAAGTGTGAGCATTGCTCAACAGCTTTCAACCAGAAAGTTCATCTCAATGATCACATCCTCAGTCATCACACCAAGGTTCGTCCTTACAACTGTCATCTGTGCAATAAAACCTATGTGTCCAAGAGTGTACTTAAGAAACATTTGAAGAAACATCTCGGCCTCTATAAGTACGCCTGTGAGGTTTGTTCAAAACGGTTCTTTGAGCGATCTGCTCTCAAGAAACACATGAGGACTCATACTTCGAATTTCCCGCTCAACAAATTGAAAAGTGAAGAACCACTTCAGTGTCATGCTTGTCTTACGTATTTCCATTTCAAGTACAAGTTGATCACTCATCAGATGTTGGAACACGGCCTTTGTCGAGAAAATGAAACTTGTTACCAATGTCCATTGTGTGATATCAAGTTTAATATTAGTGCCATGGATGATAAAGAACCACTTCCCCCTTCAATCAAACAAGAGAAAATATCGAAGCAAGAGACAAGTGATGATAATGACCATCTTCCTATCCAAGTCAAGCAAGAGAAAATTTCGGACCTTGAGAGCAGTGGTGAACCAAATTCAGAACAGCAAACCACTGTAAACAACTTGGTTGAGCCAGACTACCCAACGCATCTGAATGACCATAAAACGATATTTGCCAACCTGAAAATCACGACCGCCAACATGCAAATGATTATCAGTGAACACATCAAGTCTCATGAATATGTTGAAAATCACATGTGTGAACTTTGCTACAAAGTGTTTGAGTCTAGAGAGAATCTGATGCGTCATTTGAAAATCCATGACGATAAGGAGAGCAAACGGTTCAAATGTGAACAATGTGACAAGAGATTTTCATCAAACGCTGAGCTGAACAAGCATAGCAGTGCAATTCATCAACGACTCAAACTTCACGAGTGTGATCTCTGTGGCAAGAATTTCTCACAGAGGAATAATCTGAAGCGACATTTAGAAGAAGTACATCGGACAGATGGTATGAAGTTCGAGTGTTACGTGTGTAGCAAGGTATTAGCGACGAGTCATAGCTTGAAACGACATCTCCTCATTCATAATGGACCCAAATATACGTGTGAAATATGTGCCAAAGAATTCACACGTGTCTATGAGCTGAACATACACAAGAAATTACATGAGGATGAAAGTATGGCTAATCAGCTCAAATGTGAATTCTGTGGCAAAGTCTTCTTGAAGAAATCCAACTTGAAAGCTCACATAGAGAACAATCACCTGGATTACAGTTGTCTGGAGTGCAAGGCTGTTGGTGAAGAAATCTCGTTTGACACGAAGAAAAATTTGCTTCTCCATTTGAAGACGAAACACAAGAATGTCATCAGCAATGTGTATTTGACGTGTCTTATTTGTTTCAAAACATTCCTGACGGAAGTAGACCTCGGTAAACACATGAAGATGCATATGGATGATAATCAGATCCAGTGCCGATTCTGTAATAAATATTTCTCGAGAAACTATAACCTGAAACAGCACATGAAGACGTGCACTAAGAATGTATCTAATGGCATTCTGAACTGTGATGATAATGAAGGAGAATATAATGGACATGGCAGTCATGAGGAgaatgaagatgatgaggatTATGATGACATGAATGAGATGATGCTCGTACCAGTCATCAAAAtggaactgaaagaagaaaacgaagagaatgaggacagggaAAATCAATCCGAAGAAGAAAACTACACCCCTGTCCCGGAAGTTAGTATTAAAAGGGAAACTGATCCGCTCTCTGTGGAAGACATAATCAGCGCTGGTGAAGTATCCATCACACCCATTCCACAATCCAATACCAATAATCATGGCTCGGGTTCCACGAATAACACCCAAGCCAACAAGATTATCCAGTGTCACATATGTTTGAAAACATTCGCCAAGAAGGACAGCTTGAAGAAACATATGAAGGAGGGCAAGGTGCCCAATAACAACGCCATCATTCAGTGTCGGATCTGTAGCAAGACATTCACACGCAAGGATAGTCTGAGGAAGCACATGAGACGCTTCCATATTATCAATGATACCAACGTGAAGAAAGAATTCACCGAAGGACAAATCAACCGCAATATGCTGGATGTGATCCTCAAGGAAAGTGGTCATGAGATCAAGAGCCGCATTCCGTGTGAACTTTGCTACAAAACCTTCACGAGGAAAGATTCGCTTCGGAAGCACATGAAGATCTTTCACACGAGAAGGAACCCAAGTGCCAACTCAGGGAACTCAGGAACATCCGCCCCACCCGCGGTGAAATTAGAACAAAACGGaggagaaaaagtggaaaacagTACCAGTGTGGAGAACAGTACCAGTGTGGAGAACAGTACCAGTGTGGAGAACAGTGCCAATGTAGAGAATACCAGAAGCGTGGACAATAGAACCAGCGTCGGTCCCGTTGTCCCCATTGATAGAATACCATGCACCCTGTGCGACAAAACATTCACTAGGAAAGACAGTCTCAAGAAGCACATTCGCATCTTTCACACACAGAATCAACCGCAACACACGAACGTCATCGAGGTGGCGCTCGGTGCGCGAGCGAACGCTGCGTTCATTGACCGCATTCGGTGTGAGCTATGCGACAAATCCTTCACTAGGAAAGACAGTCTGAAGAAACACAACCGAATCTTCCACGGTGGTGCGGATCCGAAAGTGATGGACGAGCAGATGGCGCGCGGGAGTGCTGACTTCCTCGAAGTAGTCCTCAATGAGGATGGCGAAGGAGAGCCAGTCAGCATAACCAATGAGATCCTGTGCAAGATATGTAACCGGACGTTCACGAGGAATTATAATCTGAAGAAGCATATGAAGACGGTACATAAGATTGATGATAATGAGCCGTACTTTGCTTATGAGAACACGGAGTATgatgaggaagagggagagatggagggggaGGAGTTTGGCAGTTTGAGCAATAGTATGTTGGAGGTGATTATTAGAGATGATGAGCAATAA
Protein Sequence
MMDAEHAEISAKRKHEDTDNDLVSVKKIKTEVEERGPQNGEVTEESVGEGKQLSNGLDQSEDESLQGSDADKTLLNNSGELSEDESGSDDENDSDESDEESGEEEEDEHDGLKIMCDDDELGEEEEDNGEYHLLEDEDIGLGVEACLGDEDDDLEMTNGMESLFSNNPYSNDANTDLQCKNCFKVFARKSYLRGHSCSKDLQINNKALKCKYCNRRYSHKINLRLHLKLHKNPKQFQCHVCLKYLSSSSSLKVHVKTHSNEKAFKCEHCSTAFNQKVHLNDHILSHHTKVRPYNCHLCNKTYVSKSVLKKHLKKHLGLYKYACEVCSKRFFERSALKKHMRTHTSNFPLNKLKSEEPLQCHACLTYFHFKYKLITHQMLEHGLCRENETCYQCPLCDIKFNISAMDDKEPLPPSIKQEKISKQETSDDNDHLPIQVKQEKISDLESSGEPNSEQQTTVNNLVEPDYPTHLNDHKTIFANLKITTANMQMIISEHIKSHEYVENHMCELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRHLEEVHRTDGMKFECYVCSKVLATSHSLKRHLLIHNGPKYTCEICAKEFTRVYELNIHKKLHEDESMANQLKCEFCGKVFLKKSNLKAHIENNHLDYSCLECKAVGEEISFDTKKNLLLHLKTKHKNVISNVYLTCLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCTKNVSNGILNCDDNEGEYNGHGSHEENEDDEDYDDMNEMMLVPVIKMELKEENEENEDRENQSEEENYTPVPEVSIKRETDPLSVEDIISAGEVSITPIPQSNTNNHGSGSTNNTQANKIIQCHICLKTFAKKDSLKKHMKEGKVPNNNAIIQCRICSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIKSRIPCELCYKTFTRKDSLRKHMKIFHTRRNPSANSGNSGTSAPPAVKLEQNGGEKVENSTSVENSTSVENSTSVENSANVENTRSVDNRTSVGPVVPIDRIPCTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTRKDSLKKHNRIFHGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITNEILCKICNRTFTRNYNLKKHMKTVHKIDDNEPYFAYENTEYDEEEGEMEGEEFGSLSNSMLEVIIRDDEQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00443080;
90% Identity
iTF_00443072;
80% Identity
iTF_00443072;