Dcit020747.1
Basic Information
- Insect
- Diaphorina citri
- Gene Symbol
- -
- Assembly
- GCA_000475195.1
- Location
- CP125327.1:23823477-23834989[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.97 4.4e+03 -1.2 0.0 42 58 238 254 237 283 0.87 2 2 2.7e-13 1.2e-09 39.0 0.1 8 71 540 602 534 605 0.85
Sequence Information
- Coding Sequence
- ATGGACTCCTGTGAAAGTCATGCATACAATGTTGTCGACTTCGATTGGACGTTGAAGGATAAATCATTACAAGTCATTATGGAAGAAGTCTCACCTCCTCCGGAGACAAACGTCACTGAAAATATCAACACAGAAGAGCCTCAAGTTGAATCTATGGATGTCGATagtgaaataaacaaattacctGACAACACCAAATCAACTGAACCAAAAGATATCCCTGATGTAGATATGGAAACAGAAGACAACATTGTCAATCCAGAACAAAATGAATCTGGGGAAACTGTTGCAAAAATAGAAACAAGTGATcccaataaaaatatacatgACGAAACAGAACCACAAGGAAGTGATGAAAATGTAGACAATAGTATTCCTAATCATGTGGAAGATGGAAATGACAAACGAGAAGAAAGTACTGAATGTAAAGATTCCGACAAACCTCTTGACACTTGTGATGAACAATTAGTTGAGACCAAATGTGATGAAAAGAGTCCCAAAGAAACAACTGAAGATCAAGAAAGTGTAATTGAAGAAATCCCAAAAGGTCAAAATGTAAATGAGACTAATGTAGATAAAGATATTGatgcaaaagaagaagaaacaaaagttgAAGAATTAGTGGAAACAGAAAAAACATTGGAAACAGAACCACAAGAGGTAAAAGAAACACGCAAAGAGGTTCTAAAGAAAGAGGATACCAATGAGGATACAATAGAGTCAATAGAGGATGTGCAAAAATATATTGATGGTACTAGTAATGAGGATAAATCTAGCAGTGTACCAACAGAACAAACTGAAATACCAACTCTTGGAGATGCTTCAGAACCAGATGCTACTGTACCCAACGAAATCATACAAAATCCTAAAGATGAAACTGATAATGTTAAATCAGACAAACTGAGTGATGATGTTGAATCAGATAACCTTGTAGACAGTAACAAAGCTGAGATATCACATGAACTCAGTGAGACGCAAAAGGAAGTTCAGGACAATGTAATGGAAGTGGATAAAACAAATGTGAACACAAGCAATAAAGACGAAGAACTTCAAAGGGAAGTTGAAAAATTGGATAGCAAAGAGGAGGCAAGTACAGTTCCAAGTGAAACAAGCTCTGTAGTGAAACCAAGTTCCGATAGTATTAAACATCCAATCCTCACAGCTGTTAAAAAACAAGAACCTGACACTTCCAAGACAGAAAGTCCAAAACGAAAAGTATCCGCCCGGTCCAGGCGAAATCCTGTGATTCCTCTCCTCCCCAACTTGCACTATCTAGACAGCGAAACCAACTTTGGCGGCTTCTACCCGGAGTATTTCGACAGCACAATCTACATGTATCGGAGCTACTGGTGTTATGTCCAAGAAGAGTTCAACATCCCGTGCCGCCCTCTGCCGCCATACAAGACAGATTTCTATTTGAACTTCATGCCCAGTGCTCCAGTCATGCAGTCATCAAGCGGGAGGAGCATCAAGAAGCGAGAGTTCACACCAAGTGTGCCTAGCTCACATCAGGTCAAGCGAGACATACCGAGTGCGAAGAAAGAGATCAATCCGAAGAAAGAATCGCCAGCGCCCCCTAAGAAAGACCCTTCCGATGATAAGGGCCGACAGCGCTACCGCCTGCCGCTTGAGAAATTCGGCTGGAAGCGTGAGATCGTGTACAGAGGAACCAGCAATAGTCCTGCTCACAGCGCGGATGTCTACTACTACTCCCCGGCCGGGAAAAAGCTGAGGTCCATCCGGGAAATTATCGACACCCTCCCTGAAGACCATGAGTTGAAACCGTTCCACTTTACGTTCGTCAAGGAGAAGCTTGGGTTTGGATCCCCGCTAGAGGTGAGTCGGGAAGCGGTGTCCCGTACGCTGCAGAATTGTGATGAGGACACGCCCAAGAAGGCGAAAGCGAGTCCAGCCGTCAACAGGAAAGTGTTCTTTGATAAAACTCCCTCGGGCGGGAAACCCAAAGCGGACGGCAAAATGAACATGAACGGGAAACTGAAGAAATCCCCTGTATCTCTTGGAGGCGTAAAGCGAACCCATGACGAGATGGAAAGTGAAGATCCCGCGGACAAACCGACGATAAAAACAAACGGGGACGTCAAGTCAAAGACAGCggaacggtcgaaatctgtcggCAAAAGTGTGTCACCTTTAGTGAAATCGAAGAGCACAGACGGGAAAATTAGAAAGTCCGATAGTACAGGGCTTAAGAAACCCCAACAGGCGGAAAACAAAGTCCCCAACGCGATGGTGACCAAACACAAACTGGAGAACCACACCAAAGCCCCCGGTAACAAGAAACGAAGAATTGAACCTGCCGATAGAACGTACAAGCTTTCCCCGCCGGTTCGACCGATTGTGAGATCGAATAAGAACCTGATGAATGATTTATCCAACCAGTTCAGTGCCCTGGTGTATCTGTGCAGATATCTTAGGGTAGAGGACCTACTGAGGGTGGCCAGGGTGAATAGGATGTTCAATGCAGCGGCACACAGTCATGTATTGTGGCAGGTTGTCAAGCTGAAGAATTCTAAGGTTCGGGACTGGAATGGTCTGGCGGAATGTCTGAACAGGCACGGTACGCACACGCTAGACATGCTGAAAATGATAGGCAGTGCCGACCCTGATGAGAATGATGAAATATGGAACCGCTTCTACAAGGTGATCGGCAAGATACACTCACTCCGACGTTTAGAGTTGGGTAGAGTGACAGCAGCTGAAATTCTCAACGCCGCTAGTAATTGTAGTAAAAACCTAACTGAGTTCAGCGTTATTGCACAGAAGTTAGCCACCATTGATTTGAAACTTTTCCAAGgtcTCCCCAACCTAGAAATCCTACAGCTCCGCTCGTTCGAGTCAAAGAGAGAGCACGGTCTCATCATGATGAACATCCCATTGCTCTCGCACATGCGACACCTACGCCATCTGTCCCTCACCGGCGTCAAAAATCTCAAATCCTACCAGGTCAACGTGTTCaagGACTTCCCGCCGCTGGCTTCGTTAGAACTCGGCGACTGCACGAAGCTGGACGAAAGGTTTCCCGAGGCTTCGCTCGCACCGCTTACTTCACTCGTGAGACTTCGGCTGGAAATGGTGCAAGGCAACATGGCCAATAAGTTCGTGGAAACGATTGCAACGCTACCTCGCCTCAGAACACTTGAACTAATAAACATAGACACGAAAAAAGGATTCGATGAGGTGTTTGGAAGACTGAGTCATATTGAGCACCTCCTTATCTTCCCCACCTATATCACTCAGTCGTCAACCACTAACTGGCTGGTGCTCTCCGGCCTGTCCCGACTGAAGACAAGTCTAAAGTTCCTCACGTGGGGTCTGACTCAGGAGTTACTCAGGGTGACCACACTGTTCATCGAGCAATGGAACGCACAACTCAACCTGGACGACGGCGTGTCCCGGCTAGACCCAGAAGAACTGAAGAAGACCATAGTCGAATCCAACTCCATCCCTGTGATGAAACCCCTACCTGAGCTATTCGAGGCGGTCCACACGGCCGGCAAGGCGGAAGGCACAACGAAGCAGAATATATCAGAGTTGGACATCTTGCCGATTGATGAGCTGAAGACGATGTTGGAGAGAGTACTGTGCGAGACCAAAATCAAGCTGATCACTGTGCCAGTGTCTTCAACGACGAGGATTTACTTACCCAATAACTGA
- Protein Sequence
- MDSCESHAYNVVDFDWTLKDKSLQVIMEEVSPPPETNVTENINTEEPQVESMDVDSEINKLPDNTKSTEPKDIPDVDMETEDNIVNPEQNESGETVAKIETSDPNKNIHDETEPQGSDENVDNSIPNHVEDGNDKREESTECKDSDKPLDTCDEQLVETKCDEKSPKETTEDQESVIEEIPKGQNVNETNVDKDIDAKEEETKVEELVETEKTLETEPQEVKETRKEVLKKEDTNEDTIESIEDVQKYIDGTSNEDKSSSVPTEQTEIPTLGDASEPDATVPNEIIQNPKDETDNVKSDKLSDDVESDNLVDSNKAEISHELSETQKEVQDNVMEVDKTNVNTSNKDEELQREVEKLDSKEEASTVPSETSSVVKPSSDSIKHPILTAVKKQEPDTSKTESPKRKVSARSRRNPVIPLLPNLHYLDSETNFGGFYPEYFDSTIYMYRSYWCYVQEEFNIPCRPLPPYKTDFYLNFMPSAPVMQSSSGRSIKKREFTPSVPSSHQVKRDIPSAKKEINPKKESPAPPKKDPSDDKGRQRYRLPLEKFGWKREIVYRGTSNSPAHSADVYYYSPAGKKLRSIREIIDTLPEDHELKPFHFTFVKEKLGFGSPLEVSREAVSRTLQNCDEDTPKKAKASPAVNRKVFFDKTPSGGKPKADGKMNMNGKLKKSPVSLGGVKRTHDEMESEDPADKPTIKTNGDVKSKTAERSKSVGKSVSPLVKSKSTDGKIRKSDSTGLKKPQQAENKVPNAMVTKHKLENHTKAPGNKKRRIEPADRTYKLSPPVRPIVRSNKNLMNDLSNQFSALVYLCRYLRVEDLLRVARVNRMFNAAAHSHVLWQVVKLKNSKVRDWNGLAECLNRHGTHTLDMLKMIGSADPDENDEIWNRFYKVIGKIHSLRRLELGRVTAAEILNAASNCSKNLTEFSVIAQKLATIDLKLFQGLPNLEILQLRSFESKREHGLIMMNIPLLSHMRHLRHLSLTGVKNLKSYQVNVFKDFPPLASLELGDCTKLDERFPEASLAPLTSLVRLRLEMVQGNMANKFVETIATLPRLRTLELINIDTKKGFDEVFGRLSHIEHLLIFPTYITQSSTTNWLVLSGLSRLKTSLKFLTWGLTQELLRVTTLFIEQWNAQLNLDDGVSRLDPEELKKTIVESNSIPVMKPLPELFEAVHTAGKAEGTTKQNISELDILPIDELKTMLERVLCETKIKLITVPVSSTTRIYLPNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00442724;
- 90% Identity
- iTF_00442724;
- 80% Identity
- -