Dcit014414.1
Basic Information
- Insect
- Diaphorina citri
- Gene Symbol
- Tfip11
- Assembly
- GCA_000475195.1
- Location
- CP125325.1:20714376-20718457[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.9e-82 4.7e-78 264.0 20.3 21 275 1 251 1 251 0.97 2 2 0.06 9.9e+02 0.5 0.1 244 269 265 290 253 302 0.48
Sequence Information
- Coding Sequence
- ATGTACGATCTGTCTTCCCTGGCTGTCTCTCTACTCAAGCCCATCTTCAAGGACATACTATCTGCTTGGAATCCTCTGGAGGATGCGCGGAAACCCATCTCTCTGTTTCAAGAGTGGAAAAGTATATTGGAAATAGAACAGGTGCATTCCCTGTCCACAATATCCTCGACAGATCCCTACCAGCGGATCGTGTGGGACGCCCTTATGCCTTGCTTTAGAATTGCGGCCAGCACATGGAATTGTAAGAAACAGTGCGAGCCCATGTTACGTCTAGTGGAAGCTTGGAAACCTCTCCTTCCCACCTGGATGGTGGCTAACATTCTCCAACAGGAGATACTGCCCAAGATTCTGGCCGAAGTAGAAGACTGGAACCCTCTCACTGACACGGTGCCCATTCACTCGTGGGTTCTGCCCTGGGTGCCCCTGTTAGGTCATCATTTCAGCACAGCCATCTACCCCACCATCCGACACAAGCTGAGTGCTGCCCTGGTCAATTGGCACCCATCAGACTATTCCGCCCGCCTTCTTATTCTACCCTGGACGAATGTGTTCTCCCGTGGCGAAACAGACGCGTTTCTATTGCAGAACATTGTGCCCAAACTGCACATCGCTCTACAGGAGTTTGTTATTAATCCGCAACAGCAACACCTAGATAATTGGAACTGGGTAATGGAATGGAGTGAATTATTATCCTCTCAAACCATGGCCTCTATTCTGAGCGCCTCATTCTTTCCCAAGTGGCTTCAAGTATTGTCCATGTGGCTCAACATCAACCCCAACTATGACCAAGTGGCCAACTGGTATCAAGGATGGAAGTCACTCTTCACTGAGAACCTACTTCAGGAGCCTATAATCAAGGAACACTTCCGCTCAGCCCTGGACATGATGAGTAGATCTGTAGCTGGTGGAGGTGACACATTGCCCCCTCCTCCACCTCCGCCCCCTCCCAAGGAACCTTCACCATCCTCCAGTAAACACGGTTTTGCAGAATCTGTCAACGCGTCCAAGTCCGTACCGCAAGGTTTCCGTGATCTCGTACAGAAGAGTTGTGAGGAGCGAGGCATCCTGTTTATGCCCCTAGCAAATCGATACCGCGAGGGTAAACCCGTGTATAAGTGTGGCGAAGTTCAGATCTATATTGACCGGAGCGTCATTTTTGTGAGCGTGCAAAATGGCCCGTGGACGCCCAAGTCACTCAGTGACACCTTGAAATTAGCGGCCGGATAA
- Protein Sequence
- MYDLSSLAVSLLKPIFKDILSAWNPLEDARKPISLFQEWKSILEIEQVHSLSTISSTDPYQRIVWDALMPCFRIAASTWNCKKQCEPMLRLVEAWKPLLPTWMVANILQQEILPKILAEVEDWNPLTDTVPIHSWVLPWVPLLGHHFSTAIYPTIRHKLSAALVNWHPSDYSARLLILPWTNVFSRGETDAFLLQNIVPKLHIALQEFVINPQQQHLDNWNWVMEWSELLSSQTMASILSASFFPKWLQVLSMWLNINPNYDQVANWYQGWKSLFTENLLQEPIIKEHFRSALDMMSRSVAGGGDTLPPPPPPPPPKEPSPSSSKHGFAESVNASKSVPQGFRDLVQKSCEERGILFMPLANRYREGKPVYKCGEVQIYIDRSVIFVSVQNGPWTPKSLSDTLKLAAG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00442715;
- 90% Identity
- iTF_00442715;
- 80% Identity
- -