Dmen030885.1
Basic Information
- Insect
- Diaphora mendica
- Gene Symbol
- zfy1
- Assembly
- GCA_949125395.1
- Location
- OX421324.1:25441994-25443415[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00041 0.056 15.3 0.0 3 23 156 176 154 176 0.97 2 11 4.2e-05 0.0057 18.5 4.4 1 23 182 204 182 205 0.95 3 11 0.0021 0.29 13.1 0.4 1 23 212 234 212 234 0.98 4 11 7.9e-06 0.0011 20.8 1.1 1 23 240 262 240 262 0.99 5 11 0.00015 0.021 16.7 4.8 1 23 268 290 268 290 0.97 6 11 2.4e-06 0.00032 22.4 2.0 1 23 296 318 296 318 0.98 7 11 3.2e-06 0.00043 22.0 0.3 3 23 326 347 325 347 0.97 8 11 0.048 6.5 8.8 0.5 2 23 353 371 353 371 0.94 9 11 0.00025 0.033 16.1 1.1 1 23 377 400 377 400 0.91 10 11 0.0097 1.3 11.0 1.1 1 23 406 430 406 431 0.95 11 11 3e-05 0.004 19.0 4.9 1 23 437 460 437 460 0.97
Sequence Information
- Coding Sequence
- ATGGAAACAAGAATTTGCCGTATTTGTCTCAACAACACCGCATCGATTTCCATATTTGAGGAACAGGGAGATGTGCAATATAGTACGAAGGTAATGAGATGTGTCAGTGTGGTGATTGTGGAAGGTGATGGTTTACCAGATGCAATATGTACAAGCTGTGCCTCAGAACTATGCACCGCATACGAATTTGTAAATAAGTGCGAAGAGTCGGATAAGGCACTCCGATGCATTAATATTACAGAACAAAATGACGACCTATCTAAACCTGAACTTAAATTGGAAATCATTAAGCAAGAAATATCTcaagatgataatgatgataactTTGATAGTTTTATATTAGAAGAGCACAAAGGCTCGTATCTCTATGATGTTAAGAAACccagaaaaaaatatacgaaaactaAAAAATTTCAAGTGGCATTAGATAAACGAAAAAATAAGTCTAAATCGGGACCTGTTATATGTGTTGTCTGCGGTTATGTAGCGGCCAGCCGCTCTGCCATGGAGAACCATATGAGAACCCATACTGGAGAGAAACCTTTCATATGCCACTATTGCAATGCTAGATTCAACCTTAAGGGCTCACTCAAAAGGCACATactcacacaccacacacagaGAGAAAGGAAATTTATTTGTGAAACTTGCGGTAATAGCTTTTTAACTAAAAATAGTATCATAACACATATGAGGGTGCACACAGATGAGAGACCCTATGTTTGTTCCTACTGCTCTAAAGCATTTAGACAAATTGCTTCAATGATTCGTCACAAGCGTACGCATACCGGAGAATGCCCCTATACATGTCTTACTTGTTTCAAAAAGTTCAAAGACAAAAGCCATATGATGAGGCACCAGGTCGTCCACAGTAACGAGAAGAACTTCACTTGTCATCTGTGTAGTAAGTCTGTTAAAACCAATAATGCACTCAAAGCTCATATGCGGATTCATTCCAATGAGAAACACAACATATGTAGTTATTGCGGAATGACATTTTCTTTAAAAGGTAATCTGCAAGTacatataaaaagaatacaCTCTGAGAAGTCTGGTGAGTGCACTGAGTGTCAAAAAATATTTCCTGATTTAGTGTCGCATATGCGTAAGCACACGGGAGAGAAACCATTCGTGTGCAAGTTGTGTAACCAAGGATTTGTTAGTAAGAGGAGTTTGTCTAACCACATGGTGTTTAGACATGAGAATGCGTCAAAATTCAAATGTTCTATAGGGGAGTGTACAAAAACATTTCCTACAGCTATGATGTTAGAGTTTCATTTATTAAAGCACCACACAAATCACACTCCGTACATTTGTCATCACTGCTCAAAGGGCTTTTTCCGGACCAGTGATCTGTCTCGTCACCTTAGAGTGAGTCACATGGAGACAGTCAAGGTGCATGGGAAAGGTCTTGTTGTGTAA
- Protein Sequence
- METRICRICLNNTASISIFEEQGDVQYSTKVMRCVSVVIVEGDGLPDAICTSCASELCTAYEFVNKCEESDKALRCINITEQNDDLSKPELKLEIIKQEISQDDNDDNFDSFILEEHKGSYLYDVKKPRKKYTKTKKFQVALDKRKNKSKSGPVICVVCGYVAASRSAMENHMRTHTGEKPFICHYCNARFNLKGSLKRHILTHHTQRERKFICETCGNSFLTKNSIITHMRVHTDERPYVCSYCSKAFRQIASMIRHKRTHTGECPYTCLTCFKKFKDKSHMMRHQVVHSNEKNFTCHLCSKSVKTNNALKAHMRIHSNEKHNICSYCGMTFSLKGNLQVHIKRIHSEKSGECTECQKIFPDLVSHMRKHTGEKPFVCKLCNQGFVSKRSLSNHMVFRHENASKFKCSIGECTKTFPTAMMLEFHLLKHHTNHTPYICHHCSKGFFRTSDLSRHLRVSHMETVKVHGKGLVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00157418;
- 90% Identity
- iTF_00824075;
- 80% Identity
- -