Dmen003928.1
Basic Information
- Insect
- Diaphora mendica
- Gene Symbol
- ZNF296
- Assembly
- GCA_949125395.1
- Location
- OX421311.1:333635-347771[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.22 30 6.7 0.2 3 23 118 138 116 138 0.96 2 14 0.002 0.27 13.2 2.8 1 23 255 277 255 277 0.99 3 14 1.6e-05 0.0022 19.8 0.8 1 23 283 306 283 306 0.97 4 14 0.0021 0.29 13.1 2.5 1 23 311 334 311 334 0.94 5 14 5e-05 0.0067 18.2 0.4 2 23 497 518 496 518 0.98 6 14 2.5e-05 0.0034 19.2 1.4 1 23 524 546 524 546 0.98 7 14 0.38 51 6.0 0.0 2 23 637 658 636 658 0.96 8 14 0.0015 0.2 13.6 2.0 1 23 664 686 664 686 0.95 9 14 0.00032 0.043 15.7 0.9 1 23 692 714 692 714 0.98 10 14 0.00094 0.13 14.2 2.0 1 23 723 745 723 745 0.98 11 14 0.00066 0.089 14.7 3.0 3 23 793 813 792 813 0.97 12 14 0.004 0.54 12.2 3.2 1 23 830 852 830 852 0.96 13 14 1.6e-06 0.00022 22.9 1.0 1 23 858 880 858 880 0.98 14 14 1.8e-07 2.5e-05 25.9 3.1 1 23 886 909 886 909 0.98
Sequence Information
- Coding Sequence
- ATGAATCACAGCATGGACTTGGACCCGCTGAGCACTTACGAATACCCTTCATACAATAGTTACCATTCTTTAAACAATGCCCAAACGAACCTCCTCCCACCGTACCCCTACCAGCATGTCAAACAAGAAGAAACATACTACCGCCAACCAATTCAAAACAATACGGGTTACACTACCAACATACCAGAAACTGTACCTCAGAATGAacaaataccagaaacaaataAACCAGAACAGCCTACTGAAGAAAGTGATATTAAACCAGACGTAACTAAGAAGAAGAAAGATAAAAAGAACGGAAAGAATTACTGCTCACAGAAGATAAACGATGCATCATATCCATTCTACGGCTGTTCCGTCTGCAACATCAGTTACACAGCGTTACACGAACTAGATCAACATGTCACCgtacacaaaaatagaatgaCAAGTTATAGACTAAGATTAAGGAATCAGTATAAGAAGAAGCAGATAAAGAAGGAGAAGAAGAAACTTAAGAAGTTAAAGAAGATAAAACAGGAGACTGAAATGGAAATTGAAATCAAACCAGAAGATGGGTACATTGGGAGTGAGAAAACTGGAGATTATGTTAATAATGGAGATAGCAATACAGTAAAGGATAAAGAAATAGACGGAATAAATCCTGTTAGTGAAGATTTAAGTAAAATAGATGAAAATAGTGGTGCTGTGAGCAGTCAAGAGAGTTGTAAGAGCAATGATAAGGATGCTTACGATGcagaattaaataatttagagaaaatttataaatgtttcGCTTGCCAGAAACAATTTACGTTAAGTTATTATTTGAAGCTGCACGTTAGATCTCATACAGATGAAAAACCTTACAAATGCAATATGTGCGGTCAGTCGTTCATAACAGCAAGCAAACTCGGGAGGCACAACAAGCGGATACACCTCGCGGCCCGGTTTCAATGTcgaatatgttttaaaatattttctagGTTTGAGTTGCTAACAAATcattttgataaaaatcatCCCGAAGACAAATTGGAAGGGGAACCGTACGATTacaacgcaattctgccatatcTGAAAGAGTTAGAAGAACAACTGAAGGAGCAAGCAGAAGCAAAAGAACAGAAGAAAGACGACCCCTGGTTCGAAGTCGCTATCGCGCCCGACACCGAGGAAGTCAAGAAAGAGGATCAAGTTGAAGATAAGAAACTCTTACCCAAGATAGACATAATCATAGAAGAATTGAAAGTGGACAGTTTTGACGATGTGAAGGTAAAAGAGGAAATAGAAGCTGATGAGGGCGGGATCAAACCAGCGGTGGAGATGCCTGGAGATGATTTCAGAAATGATGATGACAATGATGATGTTAAACACGAGGACTTTAAAGATGACAGCCCCTCCGATGATGACTACTTCCCCTCCAATACGTGGGCTTCGACACCCAAATGCGATCCATCACCACCTCCATCACCAAAAGCGAGAAAAACAGCGACATTGAAGACGAGCACCTGTGAGATTTGTAACAAGGAGATCAGCTCAGCATCGTACATGAGGGTGCATATGCGGACCCACACGGGAGAGAAACCCTTCAAGTGTTACACGTGTGGGAGGGGCTTCATCACCAGCAGCAAGATGAACAGGCATGTGCTCACTCATGGGAGTGATGCTAAAGAAGAAGAAATTAAACAAGAAGATACAGAAGTAAAAGAAGAAGGAGAAGACCCAACAGAAGAAGATAGCAGTGGTTCAATcaagaagaaaaagaagaaacGGAAGTTAACCAAGGCGTCGTCGAAGGGGGAAGAGAAAGTGAGAAAGAAACACCAGAAGAGGCCGCACTCCTGTGAATATTGTAATCAGAAGTTCTTGCACCTGAAGATGCTGGAAGTGCACAAGAAGTGCCACGAGGGCCAGGAGCTGGTGCTGAAGTGCCAGTTCTGCCTCGAAGAAGTCATCGACAACGACGCCCTCAAGGACCACGAGGCCACGCACTCGGGACCGAAGCCCTACCTCTGCACCATCTGCGGGAAGACTTACAAGAAGAGGGAGACAATGGTGTACCACCGCAAGCAGCACCAGCCGGAGCGCGAGTACGTGTGCGACGTGTGCTCGAAGCGCTTCAGCGCCGCCTGCAAGCTCGCCAAGCACCTCGCCACGCACCGCGAGGGCGGCTTCGTGCTGCGCTACGAGTGTCCCGTGTGCGCGCACATGTTCAACACGCGCTACCACGTGCAGATGCACCTCGCCACGCACCAGAAGGAGGGGCTGATTCTAGAGTCAAACCGCAACGAAGTGTTGGCGATGGTGCTGCAGAACGCGCTGAAGATCCCGAAGCAGCCCGACGCAGCCTCCGCCTTGACTGACATGACTCCCTCGGACGAGAGGTACAAAATCTGCAAGATCTGCGGCGAAACATTCCACCACTTCTACTACCTGGAGGAACACCTcaagagtcacggctccaagaTCGCCATCGACGACACTGACAAGGCTGAGGAGAAGAAGTACATCTGCGAGATCTGCAACAAGGGCTTCAAGCTGCATTACTACCTGAAGCTGCACAGCTTCACGCACTCGAAAGAGAAGCCCTTCATGTGCCAGCAGTGCGGGAAAGGGTTCATCACCAAAGGGAAGCTCAAGAGGCACCTGGAGACTCATTCTGGACTCAAGAAGTACCAGTGCCACATATGTTATAAGTTCTTCACCAGACCCAGTTATTTAAGGATCCACATCCGAACGATCCACGGAACCCAGGACTACAACTATCGCTTCGATAAGTCCCTCACGTTATCCGCCATCTCGGCCCTCGCTCACATATCTGACAGACAGAACACAACGTAA
- Protein Sequence
- MNHSMDLDPLSTYEYPSYNSYHSLNNAQTNLLPPYPYQHVKQEETYYRQPIQNNTGYTTNIPETVPQNEQIPETNKPEQPTEESDIKPDVTKKKKDKKNGKNYCSQKINDASYPFYGCSVCNISYTALHELDQHVTVHKNRMTSYRLRLRNQYKKKQIKKEKKKLKKLKKIKQETEMEIEIKPEDGYIGSEKTGDYVNNGDSNTVKDKEIDGINPVSEDLSKIDENSGAVSSQESCKSNDKDAYDAELNNLEKIYKCFACQKQFTLSYYLKLHVRSHTDEKPYKCNMCGQSFITASKLGRHNKRIHLAARFQCRICFKIFSRFELLTNHFDKNHPEDKLEGEPYDYNAILPYLKELEEQLKEQAEAKEQKKDDPWFEVAIAPDTEEVKKEDQVEDKKLLPKIDIIIEELKVDSFDDVKVKEEIEADEGGIKPAVEMPGDDFRNDDDNDDVKHEDFKDDSPSDDDYFPSNTWASTPKCDPSPPPSPKARKTATLKTSTCEICNKEISSASYMRVHMRTHTGEKPFKCYTCGRGFITSSKMNRHVLTHGSDAKEEEIKQEDTEVKEEGEDPTEEDSSGSIKKKKKKRKLTKASSKGEEKVRKKHQKRPHSCEYCNQKFLHLKMLEVHKKCHEGQELVLKCQFCLEEVIDNDALKDHEATHSGPKPYLCTICGKTYKKRETMVYHRKQHQPEREYVCDVCSKRFSAACKLAKHLATHREGGFVLRYECPVCAHMFNTRYHVQMHLATHQKEGLILESNRNEVLAMVLQNALKIPKQPDAASALTDMTPSDERYKICKICGETFHHFYYLEEHLKSHGSKIAIDDTDKAEEKKYICEICNKGFKLHYYLKLHSFTHSKEKPFMCQQCGKGFITKGKLKRHLETHSGLKKYQCHICYKFFTRPSYLRIHIRTIHGTQDYNYRFDKSLTLSAISALAHISDRQNTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00157427;
- 90% Identity
- iTF_00823285;
- 80% Identity
- -