Dlon009594.1
Basic Information
- Insect
- Diachasmimorpha longicaudata
- Gene Symbol
- -
- Assembly
- GCA_034640455.1
- Location
- CM067955.1:4149583-4152468[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.026 2.1 9.0 0.4 3 21 8 27 6 28 0.85 2 14 1.1 91 3.9 0.0 2 20 34 52 33 53 0.92 3 14 2.4 1.9e+02 2.8 0.2 1 12 226 237 226 246 0.88 4 14 0.46 37 5.1 3.4 1 20 350 369 350 371 0.94 5 14 0.00025 0.02 15.4 2.6 3 23 377 397 376 397 0.97 6 14 0.00016 0.012 16.0 4.1 1 23 408 430 408 430 0.97 7 14 0.0014 0.11 13.1 0.7 1 23 449 470 449 470 0.92 8 14 0.00036 0.029 14.9 0.1 2 23 476 497 475 497 0.95 9 14 4.6e-05 0.0037 17.7 4.8 1 23 551 573 551 573 0.99 10 14 2e-06 0.00016 22.0 3.7 1 23 579 601 579 601 0.96 11 14 8.9e-05 0.0071 16.8 5.1 1 23 607 629 607 629 0.98 12 14 4.4e-05 0.0035 17.7 1.2 1 23 635 657 635 657 0.98 13 14 0.00023 0.019 15.4 0.1 1 23 661 683 661 683 0.98 14 14 6.6e-05 0.0053 17.2 0.1 1 23 691 713 691 713 0.98
Sequence Information
- Coding Sequence
- ATGGGATCGTCACTTCTAGTCTGTCCCATGTGCTGTGGAGAGACATTCAACAGTTCCCAGTCACTTAAATATCATTTATTAAGTATGACTGATAATTTGTACTGTCCGGGATGCTCGCAAAGATCCGAGTCTGTTGCTGCACTGATTCAGCATCTTGATGCTTGTGGCACCGGGGATAATGTGACTTTCGAAGAGACTGTCAATGATGATAAAATTGGAGAGGACGAGGTGCTAATGGATACCAATGTCGAACAAATTCACGAAAGTTTTCTGGCATCTGTCAACAACGAGGGCATTATGATCGTAGGTGGACCTAGATCCCTAGAAGTGGACGACgatgGAGAAATCAAGGTGGTGCAAAAAATGGGCAGTGACACCGAAATGGAGGAGTCTATTCTCCCTGATAATGAGTACGAGGATCTCGAGAATAtcgatggaaatgaaaaaaactcgGAGAAGTCAACGATCAGCAGGAAAGACACCAGCGATAACGCCCCTGTCATCAGTATTCCAGAGAAGGCAGATGACACGAGTAACGATAACGTTATCGGAATCTATACTGATGAATCAACTGAATACTTTAAGGATCAGGAGAACTTGATCGAAATCACTCAGGATGAGGATACCAGAGATATCGGTGAAGATGAATTCATGAAGatcgATGCAACAGCGCTCTACAGTTGTAGCAGTTGTGGTATGGGTTTCAATTCGGTGTTAGATCACATAAAACAGTACCACGACGGTCAGGAAGTTGTCCTAGAGATGGCTGACGAGTCACCAACCCTTCCGGAGGAGCCTGCGGTACCCGAAGAGCCAGTGGCAAAGGCCAAGCAGAGGCAGAAGATGAATACAATCAAAACTGAAGAGTGCATAGACTCGGAGGGAAGACTCTACACAAGAAAAGTGGTGCAGATCGAGCCTTTTTGGGATAAATCCAACCGCCAGGGCGACAATTCCAAGACAGCTTCGATGATAGAAAAGTTCTTTTTTAACACTGAAGGTGtcaagACCTGTCAAAAACCAGAGCCCCCCGTTCCACCCAAGTTCCACCGTTGCAGCCAGTGTCTGGAGCAGTTCTCCAAACTGACAGATTTTCGTACGCACGTCTGCCTGAACGGCTCAAACCACTGTGATCACTGCGACCAATCATTTGCAACAGCAAAGGCCCTTCAAATCCACTCGAAAATGCACGAAGTGGATTCCAACGAGCCTGACCGCCAGTTCATCTGCACCACCTGTGGTACCAAGTTCTCCTCCCATAAGAGTTTGCGCCTGCACTCTCGTATGCACGCTCCGGTGCGCGAGAGGCACGTGGAGGCGCCCGAAGGCGACCCAGACGCTACCTTCACGTGCTTCGAATGTGGAAAATCCTTCTCCGAGTCCTACAGGAGCGCTCACATGGCTCTGCATACAGAAGACTCTGTCACCTGCACGATATGcaatagaaaatttgattctgcTGATTCTTTAGCAATGCATGCAGCTGTACATCCGGAGCTGGGGATCTCCGAGCCCCGCAGGAATCAAGGGAGGAAACCCTGGAAGAAGGCGAAAGCGCCCAGCCACAGTGAGAATCCTTCGGAGGGGGCCGAGGAGGAAACTGAGGATGACAAGAGCAAGgacaaggacaatggggaCCTCTCGAAACCTTATCAGTGCCAGCACTGCGGGAGGAGGTTCACCAGACCTCATGAGAAGGTGAAACACGAGAGGATTCACACTGGAGAGAAGCCACATGCCTGTGAGgTCTGTGGAAAAACTTTCCGTGTCTCTTACTGCCTGACCCTTCACATGAGGACGCACACAGGGGTCCGGCCCTACGAGTGTAAACATTGTGGCAAACGCTTCAAAGCCTCATCAGTTTACAATCATCACTTGCTTACCCACGGCGAGGAGAGGGCGTATAAATGTCCGTTCTGTGTGAAGACATTTAAAACCCGTGTGCAATTAGCTGGTCACAAAAATAGTCACACTAAACCATTCAGGTGTACCGAGTGCTCGAGGCCATTTGCCTCGTTATACGCCGCCAGGGCCCACATCGCCACCCACAAGAAAGACAACAATTTGAAATTCAGTTGCTATATCTGCGGTGCCTCCTACGGGCGTGCATTCGCTCTCAATGATCACATGAAGGTCCATGGCAGTGAGGCGGTTGCAACCCCGGAGCCTGCACGCGAGGAAGTTATCCATGAGGACTTTCTCCTCGAGGAGGACATAACTGAGCAGGAGCTCAGTCAGGAAATCAATCCCGATTtgcaattgaatgaaaatggtTTGATCAAGAAATTCGTGGACTGTGATTGA
- Protein Sequence
- MGSSLLVCPMCCGETFNSSQSLKYHLLSMTDNLYCPGCSQRSESVAALIQHLDACGTGDNVTFEETVNDDKIGEDEVLMDTNVEQIHESFLASVNNEGIMIVGGPRSLEVDDDGEIKVVQKMGSDTEMEESILPDNEYEDLENIDGNEKNSEKSTISRKDTSDNAPVISIPEKADDTSNDNVIGIYTDESTEYFKDQENLIEITQDEDTRDIGEDEFMKIDATALYSCSSCGMGFNSVLDHIKQYHDGQEVVLEMADESPTLPEEPAVPEEPVAKAKQRQKMNTIKTEECIDSEGRLYTRKVVQIEPFWDKSNRQGDNSKTASMIEKFFFNTEGVKTCQKPEPPVPPKFHRCSQCLEQFSKLTDFRTHVCLNGSNHCDHCDQSFATAKALQIHSKMHEVDSNEPDRQFICTTCGTKFSSHKSLRLHSRMHAPVRERHVEAPEGDPDATFTCFECGKSFSESYRSAHMALHTEDSVTCTICNRKFDSADSLAMHAAVHPELGISEPRRNQGRKPWKKAKAPSHSENPSEGAEEETEDDKSKDKDNGDLSKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYECKHCGKRFKASSVYNHHLLTHGEERAYKCPFCVKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIATHKKDNNLKFSCYICGASYGRAFALNDHMKVHGSEAVATPEPAREEVIHEDFLLEEDITEQELSQEINPDLQLNENGLIKKFVDCD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01273969; iTF_01273268; iTF_00438265;
- 90% Identity
- -
- 80% Identity
- -