Dall004762.1
Basic Information
- Insect
- Diachasma alloeum
- Gene Symbol
- -
- Assembly
- GCA_001412515.3
- Location
- NW:272831-281765[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.017 1.3 9.0 0.4 3 21 8 27 6 28 0.85 2 14 0.76 58 3.9 0.0 2 20 34 52 33 53 0.92 3 14 1.6 1.2e+02 2.8 0.2 1 12 225 236 225 245 0.88 4 14 0.095 7.2 6.7 2.5 1 20 348 367 348 369 0.94 5 14 0.0007 0.053 13.4 2.2 3 23 375 395 374 395 0.97 6 14 0.00015 0.012 15.5 3.2 1 23 406 428 406 428 0.97 7 14 0.00091 0.069 13.1 0.7 1 23 447 468 447 468 0.92 8 14 0.00024 0.018 14.9 0.1 2 23 474 495 473 495 0.95 9 14 3.1e-05 0.0024 17.7 4.8 1 23 549 571 549 571 0.99 10 14 1.4e-06 0.0001 22.0 3.7 1 23 577 599 577 599 0.96 11 14 6e-05 0.0045 16.8 5.1 1 23 605 627 605 627 0.98 12 14 3e-05 0.0022 17.7 1.2 1 23 633 655 633 655 0.98 13 14 0.00016 0.012 15.5 0.1 1 23 659 681 659 681 0.98 14 14 4.5e-05 0.0034 17.2 0.1 1 23 689 711 689 711 0.98
Sequence Information
- Coding Sequence
- ATGGGATCGTCACTTTTAGTCTGTCCCATGTGCTGTGGAGAGACGTTCAATAGTTCACAGTCACTTAAATATCATTTATTAAGTATGACTGATAATTTGTACTGTCCTGGATGCTCGCAGAGATCAGAGTCTGTTGCTGCATTGATTCAGCATCTTGATGCATGTGGCACTGGGGATAATGTGACTTTTGAGGAGACTGTCAATGAAGGAAAAATTGGGGAGGGCGAGGTGTTGATGgATACAAATGTCGAGCAAATCCACGAAAGTTTCTTGGCATCTGTCAACAACGAGGGTATCATGATTGTGGGAGGACCGAGATCCCTAGAAGTGGACGACGATGGACAAATCAAGATGGTTCAAAAAATGGAGCCGGAGAACGACCCGGGGGAGTCCATTCTTCCTGACGACGAGTACGAGGATCTTGAGAACATCGACGAGGATGGCTCTGTGAAATCGTCAACCAGCAAGAAAGATGAAACCAGTGAAAACGCCCCTGTGATCAGCATCCCAGAGAAGACAGACGACACAAGCAACGAGAACAACGTCATTGGAATTTACTCTGACGAAACGGCTGAGTACTTCGAGGGCGACCAGAGCCTAATGGAAATCAATGAGGATGAGGATACTAAAGAGCTCGGAGAAGAATTCATGAGGATCGACGCAACAGCCCTGTACAGCTGCAGCAGTTGTGGGATGGGTTTCAATTCGGTGTTGGATCACATAAAACAGTACCACGACGGTCAAGAAGTCGTACTAGAGATGGCGGACGAGGCGCCAGTCCTCCAGGAGGAGCCTGCAGAGCCCGAGGGGCCAGTGACGAAGACCAAGCAGAGGCAGAAGATGAATACAATCAAGACTGAGGAGTGCATAGACTCGGAGGGGAGACTCTACACCAGAAAAGTCGTGCAGATCGAGCCTTTTTGGGATAAATCCAACAATCAGAGTGACAATTCGAAGACGACTTCAATGATTGAAAAGTTCTTCTCCAATGCTGAAGGTGTCAAgCCCCGTCAAAAGCCGGAGCCCCCAGTCCCCAAGGTCCACCGCTGCAACCAGTGCCTCGAGCAATTCCCCAGACTGACGGACTTCCGAACGCACGTGTGCCTCAACGGCTCCAACCACTGCGACCACTGCGACCAGTCGTTTGCAACAGTGAAGGCCCTCCAGGTCCACTCGAAAGTCCACGAAGTGGAGTCGAACGACCCTGACCGCCAGTTCATCTGCACCACCTGCGGCACCAAGTTCGCCTCCCACAAGAGCCTGCGCCTCCACTCGCGCATGCACGCCCCAGTGCGAGAGAGACACGTGGACGCACCCGAGGGCGATCCCGATGCTACCTTCACGTGCTTCGAGTGCGGAAAGTCATTCTCAGAGTCATACAGGAGTGCCCACATGGCTCTGCACACTGGGGACTCTGTCACCTGCACAATCTGCAATAGAAAGTTTGACTCTGCGGACTCGCTAGCCATGCATGCAGCTGTCCACCCGGAGTTGGGGATGTCCGAGCCCCCGAGGAATCAGGGGAGAAAGCCCTGGAAGAAGGTGAAACCGCCCAGTCCCAGCGAGGGCCCCGCCGAAGGGGAGAAGGAGGGGGCCGAGGGTGCTAAGGGGAATGACAAGGACAATGGGGACCTGTCGAAGCCTTACCAGTGTCAGCACTGTGGGAGAAGGTTCACCAGGCCTCATGAGAAGGTCAAACACGAGAGGATTCACACTGGGGAGAAACCACATGCTTGCGAGGTGTGTGGAAAAACATTCAGAGTCTCTTACTGCCTGACCCTCCACATGAGAACCCACACAGGGGTTCGTCCCTACGAGTGCAAGCACTGTGGCAAGCGTTTCAAAGCTTCGTCAGTCTACAATCATCACTTGCTGACTCACGGCGAGGAGAGGGCGTACAAATGTCCATTCTGCGTCAAGACATTCAAAACACGTGTGCAATTGGCAGGTCACAAAAACAGTCACACCAAACCCTTCAGGTGCACCGAGTGCTCGAGGCCATTTGCCTCGTTGTACGCTGCCAGGGCGCACATCGCCACCCACAAGAAGGACAACAACTTAAAATTCAGTTGCTACATCTGCGGTGCGTCCTACGGGCGTGCATTCGCACTCAATGATCACATGAAGGTGCATGGCAGTGAGGCTGTTGCCACACCTGAACCTGCACGCGAGGAAATTATTCACGAGGATTTTCTCCTGGAGGAGGACATCACCGAGCAGGAGCTCGCCGAGGGAATCAGTCCCGATTTACAATTGAGTGAAAACGGCATGATCAAGAAATTCGTGGACTCTGATTGA
- Protein Sequence
- MGSSLLVCPMCCGETFNSSQSLKYHLLSMTDNLYCPGCSQRSESVAALIQHLDACGTGDNVTFEETVNEGKIGEGEVLMDTNVEQIHESFLASVNNEGIMIVGGPRSLEVDDDGQIKMVQKMEPENDPGESILPDDEYEDLENIDEDGSVKSSTSKKDETSENAPVISIPEKTDDTSNENNVIGIYSDETAEYFEGDQSLMEINEDEDTKELGEEFMRIDATALYSCSSCGMGFNSVLDHIKQYHDGQEVVLEMADEAPVLQEEPAEPEGPVTKTKQRQKMNTIKTEECIDSEGRLYTRKVVQIEPFWDKSNNQSDNSKTTSMIEKFFSNAEGVKPRQKPEPPVPKVHRCNQCLEQFPRLTDFRTHVCLNGSNHCDHCDQSFATVKALQVHSKVHEVESNDPDRQFICTTCGTKFASHKSLRLHSRMHAPVRERHVDAPEGDPDATFTCFECGKSFSESYRSAHMALHTGDSVTCTICNRKFDSADSLAMHAAVHPELGMSEPPRNQGRKPWKKVKPPSPSEGPAEGEKEGAEGAKGNDKDNGDLSKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYECKHCGKRFKASSVYNHHLLTHGEERAYKCPFCVKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIATHKKDNNLKFSCYICGASYGRAFALNDHMKVHGSEAVATPEPAREEIIHEDFLLEEDITEQELAEGISPDLQLSENGMIKKFVDSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00438936;
- 90% Identity
- -
- 80% Identity
- -