Dlon013442.1
Basic Information
- Insect
- Diachasmimorpha longicaudata
- Gene Symbol
- -
- Assembly
- GCA_034640455.1
- Location
- CM067961.1:4139755-4142014[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00045 0.036 14.6 1.3 2 23 62 84 61 84 0.96 2 17 3.9e-05 0.0031 17.9 5.7 1 23 88 110 88 110 0.99 3 17 1.1e-05 0.00089 19.6 0.4 1 23 116 139 116 139 0.95 4 17 4.3e-06 0.00035 20.9 0.2 1 23 146 169 146 169 0.97 5 17 0.0052 0.42 11.2 2.3 3 23 203 223 202 223 0.97 6 17 0.0012 0.1 13.2 0.2 2 23 230 252 229 252 0.94 7 17 0.00059 0.047 14.2 0.5 2 23 257 278 256 278 0.96 8 17 7.4e-06 0.00059 20.2 2.2 1 23 284 306 284 306 0.98 9 17 0.00019 0.015 15.8 1.5 1 23 397 419 397 419 0.98 10 17 2.8e-07 2.2e-05 24.7 2.7 1 23 425 447 425 447 0.97 11 17 0.0011 0.085 13.4 3.7 1 23 454 477 454 477 0.95 12 17 4.3e-06 0.00035 20.9 1.1 1 23 483 505 483 505 0.98 13 17 0.005 0.4 11.3 1.6 3 20 512 529 510 533 0.83 14 17 3.2e-05 0.0026 18.2 1.8 1 23 540 562 540 562 0.96 15 17 7.3e-07 5.8e-05 23.3 3.1 1 23 566 588 566 588 0.98 16 17 0.0078 0.63 10.7 3.1 1 23 594 616 594 616 0.96 17 17 9.8e-06 0.00079 19.8 0.8 1 23 622 644 622 644 0.98
Sequence Information
- Coding Sequence
- ATGTTGGACACAATAGCTCATTCCTCTCCTGCTGAGTACCGAGTGGTTGTGGTATGCAAGCCATCAGGCGAGAAGACAACCTCCCTGATCCTGGGTGACAAAGAAATAGCCCGAAACATCCCCCTGATGTTACCAACAAAAGATCCACTCTGCACTCGTGACCAAATAATGAAGGCAACAGTCGAATGTCACATCTGTCATCGTAAATTTGTTGATCGTGCTGCTGTCGTCAAGCACACATCAACAGCCCACAAATCCGCCTACAAGTGCAAGCACTGTGATACATGTTTCTTCACTCAAACAGCGCTGGATCAGCACATGGCGACCCATAAACATCCCCTGGTATTCCCTTGTCCCCAAtgcaagaaaaaatataaaagaaaaGACGGCCTCAATCTCCACATCGTCAGGGCACACAGCAAGATCGAGGCAAAATTCACTTGCGACGATTGTGATAAATCTTTTCAACTGAAAGCTGATTTACTTGCCCACATGAGTCGTGCTCACATGCTCCAGGAGTGCAGATTTTGCCATAAAATTGTCAAAGACTTGAAGACTCACGAGGATGCacacaaaaagaaaaatgccGATATCATTGACGAGAATTGTGATCTCTGTGGACAGAGATTCAGATCAAAGGCGAGATACGATACTCACAGGAAAAAACACAAGGACGGAAGAAATCTTGAGTGCAAAGAGTGTGGACTTGTTTTTCCTGGTCATCGTGCCCTTATCAATCACCGTGATAGGGAGCACAGATCAGGAACAACTTGCGAAATATGCAAAAAAGTTTTCTATTCAATTACTAATTATTATCAACATGTTCTGGTTCATGCTGGCATAAAGCCGTACAAGTGTGACGTGTGCTCGGAAAATTTTAGCCAGAGAACGAGTTtgaagagacacagggagagaCACGAGGGACCACTTCCTCCATTCGATGAAGTTACCAGGATTGCACATCTTGCAAAGGAATATCTTGATACATGCCAGGATGATTGTTTAATCCACGATAACGAGCCTCTCGCGACCAGAATAATTCAGCAGTCACCAAAAACCAAACCGAAGAGGGCTAAGAGAGTCAAGAATATTGTTAAAACAAGCGTCATACGTCTCCCAAGATCTCCAAAGCCGGCAAGGTTACCAGCTCGTGAAATAATTCCAGGTGAAAATGTGTCAGTTAAATCCTACGAGTGTGAATTATGTCCAGCGAGCTTCGACAGACACAGTAGACTGCTGAATCACATGTTCAAACACAGTGATTCACGTCCTCACAAGTGTACGGTGTGCAATAAATCCTTCAAGACCCCCAAGTACCTGATAAGGCACATGGATATCCATCAGGAGCCTGAGGAGCTTTTCAAGTGTGAGGAGTGTGGCTTCTGTGCAAAATCAAAGTCCTATCTGAAGATTCATTTCATCAGGAAGCACACTGAGGACTGGAGCTTCACGTGTAAAGTCTGtggaaaaatgttcaaaatcCAGGGGGATTACACTACTCACATGAAGGATCACGATGTTGACTCCTCCATCTGCGACATCTGTGGAAAATCCTACGCCAGCAAGAGTTCACTCTACTTTCACAAGCACTACAAACACAAGACAAGAGTCAAAGAGTTTGAGTGCAGTATCTGCAAGAAGCAGTTCAAGAGTCAGAAGAATTTGGACAGTCATACTGAACTCCACTGGATGACCTTCGTCTGTGAGCACTGTGGCATGAGGTTCAACAGCAAGTATGGACTGACAAAACACCTGAAGACTCATAACAATGACAAACTGTATCTCTGTACAATTTGCAACAAGAGCTTCAGCTGTCTGAGCTCCCAGAAAATTCATCTATTGACTCATGTAGGAGAGAGACCGTACATTTGCGATGTCTGTGGAAAAAGTTTCACTCAACGAACGCCAATGATGCTTCACAGGAGGAAGCATCCTGGTACACATCCTCCTCTGCCACCTGTGAGAATCTCGAGACTCCTCGGAAATATGAGGGGGGCtattgtgaataaaaatgactaA
- Protein Sequence
- MLDTIAHSSPAEYRVVVVCKPSGEKTTSLILGDKEIARNIPLMLPTKDPLCTRDQIMKATVECHICHRKFVDRAAVVKHTSTAHKSAYKCKHCDTCFFTQTALDQHMATHKHPLVFPCPQCKKKYKRKDGLNLHIVRAHSKIEAKFTCDDCDKSFQLKADLLAHMSRAHMLQECRFCHKIVKDLKTHEDAHKKKNADIIDENCDLCGQRFRSKARYDTHRKKHKDGRNLECKECGLVFPGHRALINHRDREHRSGTTCEICKKVFYSITNYYQHVLVHAGIKPYKCDVCSENFSQRTSLKRHRERHEGPLPPFDEVTRIAHLAKEYLDTCQDDCLIHDNEPLATRIIQQSPKTKPKRAKRVKNIVKTSVIRLPRSPKPARLPAREIIPGENVSVKSYECELCPASFDRHSRLLNHMFKHSDSRPHKCTVCNKSFKTPKYLIRHMDIHQEPEELFKCEECGFCAKSKSYLKIHFIRKHTEDWSFTCKVCGKMFKIQGDYTTHMKDHDVDSSICDICGKSYASKSSLYFHKHYKHKTRVKEFECSICKKQFKSQKNLDSHTELHWMTFVCEHCGMRFNSKYGLTKHLKTHNNDKLYLCTICNKSFSCLSSQKIHLLTHVGERPYICDVCGKSFTQRTPMMLHRRKHPGTHPPLPPVRISRLLGNMRGAIVNKND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00351333; iTF_01273959;
- 90% Identity
- -
- 80% Identity
- -