Dall002616.1
Basic Information
- Insect
- Diachasma alloeum
- Gene Symbol
- Trl
- Assembly
- GCA_001412515.3
- Location
- NW:232284-242131[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.1e-19 1.8e-15 56.2 0.0 10 50 198 240 191 243 0.82 2 2 2 1.2e+04 -4.4 0.6 20 27 316 325 311 332 0.64
Sequence Information
- Coding Sequence
- ATGGGGAGCAGTGGACAGCTGTACAGCCTCTCGTGGGGAGAGTTCGGCAGTTCCCTGACGACTGCCGTTCAATTACTCAGGGGACACGGTGATCTTGTTGACGTGACACTCGCTGCTGGTGGCAGGAGCTTTCCAGCTCACAAAATCGTTCTGTCAGCAGCCAGTCCCTTTCTCCTAGATCTCCTCAAAAGCACACCATGTCAACATCCGGTTGTTATGCTCGCGGGGATCAGCTCGGATGACTTGGAGTCACTCCTGGAGTTTGTTTATCGGGGGGAAGTCAGTGTCGAGCCCTCGCAATTGCCCTCTTTGCTACAAGCTGCTCACTGTCTCAACATTCATGGACTTACGCCACCTACTGTTTTGACCGAGAATGGAGAAGCGGTGCCACCCTCAGCAATTCCGGAAGCTTCAGAACCCATAACCCGGGAGACAATGAACTCCTCAATCCCAAATCAGCGTCGTCGAAAGCGAAGGAAATCCTCGTCATCCTGCAGCAAATGGCCGCGCCTGGACAACACAACAGACTCCGAGGAACGACAGGAGGACGACAGAACAACGGACTACGACCAGAAGACCGAGGAGCCAACCCCGGGAGACGAAGATAACCAGTATAAGGTGAAAAACGTCTCGGATCAGCCCACGACGTGCCCCTTGTGTGGAGCGATATTGAGACAGTCCCGGAACCTGAGGAGACACTTGGAGCTGCTCCACTTTGCACCGGGCAACAGTGGAAACGCGGGGATAAGAGTGCGAAGGCGCAAAACAGACTTCCAGTCCCCCACTATGGTCCCAAGACCTACTCTACATAGCTTGAGGATGGAACACGCACAGGCGAGGTCCATTGATACTCTAGATTTTTCTGCTGCGTCGATAACGTCCAGCCTTGCAGGAAATTTGATATCATCCGGTGGAAATCTCCTAAATTCACCGGACCAGTGTCTCCAATCGTCTGAACCAGCCTCCAGCACCTGCAGCACAACGATCGCCAGCTCTCTGAACAACGGAATTTACCCCACAGACAGCAGTGCAAGCATGCTGAGTTGTCTCCTTCCGAACTTACCTTCCTTATCGTCTTTGTCCTCCTCCCACGATGTCTTCAGGCACAGTGAGATCCTCCGGGCGGGAATAGCTTACCACGACTCCACGAGACAACACGCGAGGCAATTCCAGCGCACAGATGTCACGTAG
- Protein Sequence
- MGSSGQLYSLSWGEFGSSLTTAVQLLRGHGDLVDVTLAAGGRSFPAHKIVLSAASPFLLDLLKSTPCQHPVVMLAGISSDDLESLLEFVYRGEVSVEPSQLPSLLQAAHCLNIHGLTPPTVLTENGEAVPPSAIPEASEPITRETMNSSIPNQRRRKRRKSSSSCSKWPRLDNTTDSEERQEDDRTTDYDQKTEEPTPGDEDNQYKVKNVSDQPTTCPLCGAILRQSRNLRRHLELLHFAPGNSGNAGIRVRRRKTDFQSPTMVPRPTLHSLRMEHAQARSIDTLDFSAASITSSLAGNLISSGGNLLNSPDQCLQSSEPASSTCSTTIASSLNNGIYPTDSSASMLSCLLPNLPSLSSLSSSHDVFRHSEILRAGIAYHDSTRQHARQFQRTDVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00438209;
- 90% Identity
- iTF_00438209;
- 80% Identity
- iTF_00438209;