Basic Information

Insect: Diachasma alloeum
Gene Symbol: KRBA2
Assembly: GCA_001412515.3
Location: NW:1960210-1964660[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 8.1e-06 0.00062 19.5 2.7 2 23 242 263 241 263 0.97

2 13 6e-05 0.0045 16.8 4.2 1 23 269 291 269 291 0.95

3 13 0.00045 0.034 14.0 2.0 2 23 297 319 296 319 0.93

4 13 4.9e-07 3.7e-05 23.4 0.7 1 23 331 353 331 353 0.99

5 13 3.1e-07 2.3e-05 24.0 1.9 1 23 359 381 359 381 0.97

6 13 7.3e-06 0.00055 19.7 1.6 1 23 387 409 387 409 0.97

7 13 0.0017 0.13 12.2 0.4 1 23 415 437 415 437 0.99

8 13 1.1e-05 0.00081 19.1 0.2 3 23 445 466 443 466 0.96

9 13 8.4e-06 0.00064 19.5 1.3 1 23 472 494 472 494 0.98

10 13 5.4e-05 0.0041 16.9 4.7 1 23 500 522 500 522 0.98

11 13 3e-06 0.00023 20.9 0.4 1 23 528 551 528 551 0.96

12 13 2.6e-05 0.002 17.9 3.4 1 23 557 579 557 579 0.97

13 13 4e-06 0.0003 20.5 4.6 1 23 585 607 585 607 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	8.1e-06	0.00062	19.5	2.7	2	23	242	263	241	263	0.97
2	13	6e-05	0.0045	16.8	4.2	1	23	269	291	269	291	0.95
3	13	0.00045	0.034	14.0	2.0	2	23	297	319	296	319	0.93
4	13	4.9e-07	3.7e-05	23.4	0.7	1	23	331	353	331	353	0.99
5	13	3.1e-07	2.3e-05	24.0	1.9	1	23	359	381	359	381	0.97
6	13	7.3e-06	0.00055	19.7	1.6	1	23	387	409	387	409	0.97
7	13	0.0017	0.13	12.2	0.4	1	23	415	437	415	437	0.99
8	13	1.1e-05	0.00081	19.1	0.2	3	23	445	466	443	466	0.96
9	13	8.4e-06	0.00064	19.5	1.3	1	23	472	494	472	494	0.98
10	13	5.4e-05	0.0041	16.9	4.7	1	23	500	522	500	522	0.98
11	13	3e-06	0.00023	20.9	0.4	1	23	528	551	528	551	0.96
12	13	2.6e-05	0.002	17.9	3.4	1	23	557	579	557	579	0.97
13	13	4e-06	0.0003	20.5	4.6	1	23	585	607	585	607	0.98

Sequence Information

Coding Sequence: atgaataatattcaTTCAGAGCTCATGCTAAAGAACGAGGCAAAGGAAATTGAAGAATCCATTCATCTCCAAGAGAGCACTCCTCAACAAATTTCCCAAATCAACGAAAAGGCTGAAGTGCATGTGATCGACCTGCGAAATGATCTCGACAATAACAAGAACAATCCACACAAATATTTCTTAGTATACATAGAAGCATACTCGAGCTATAGTGTGTTAAAACCACTAAGACTGAATAATGACGATGAAATAGCGGAGAACCTCCTAgatattttttccattataGGATCTCCGGCCATAATCAACTATCACAATAAAAATCATactgaaaaattatcagaagtCCTAAAAACTTACACCACACCCATCTTCAACGTAAAAGTGGAACAACACGGTAATAAAGAGGGCGCAATCTCCCTGAAAAATCATTTCGAGAAGCAATTGTTCGATTGGACCAAAGAAAATCCAGATAAGCCCCTACAAATCGGCCTAAAATTTCTCCAGATGATGAAAAACAACAGAATTAACCCACTAACAAATAAGTCCCCATTCCAAGTActattcaatcaattaataACTCTCGATAATCAATTTCCCTTCAAACCCGAGTATTCTCCAAAAACTGGTGCCACTAAAGAAATCCCAAACGATTCGAAATCTCCCAGAAAACGAACGAATACCAAACAACCCTCAAAGCCCTCGCCATGCACCCCCTCCCCACTAACCTGCCCGCACTGTTCCCAGAAATTCACCTTCCCAAGTGTATTAAAACGTCACCTGCGATCTCACACAAACGAACGTCCCTACGTCTGCGAAATCTGTAACAAAACATTCAAGCAATTGGGCCACCTGAGCCAGCACTGCTTAACCCACGACTTCCCGACATCCCAATGCACAATCTGCAGTACAAAATTCGAATCCCTGGAGCACCTGAAGACCCACTTATCAGAAAACCACAGGAATAAACGGGGAACACCGACCAAGTCGATCTTTCAATGTGACGTTTGCAAGAAAGTTTTCATGACCAAAAGTGTATTGGAGCGACACATCCTGACGCATACCCACGAGCGCCAGTTCGATTGCAAGATCTGCGGGAAGAGATTCAAGCAGGCAGGACATCTGAAGTCTCATACGTTGGTCCATACTGGAGAGAGGAAGTTTGCGTGTTCGATATGCTCGAAGCGTTTTACCCTGTCGAACAGCCTGAAGAAACATATGTACGTCCACAACGGGGAGAAACCTTATCAGTGCGATGTGTGCGGGTCCAGGTTCCTCGAGAGAAGAAACCTGAACGGCCACTTGATGACTCATACGAATGAGAGACCTTTCGGCTGCAAAATATGTGGGAAACGTTACACTCTGGCGGACACTTTGAGGAGACATATCAGTGTGGCCCATGAGAATGGCAGGACTTATCAGTGTGAGATCTGTGCGAAGATGTTCAAACAGTTGGCGCATCTGTCTGTTCATAAGAAAGTTCATACCGATGAACGACCCTTTCAGTGTCATCTCTGTGATAAGAACTTTAAGCATAAGAATGTGCTCAAGAGCCATCTGGCTATTCATGCTAATGTTAGACCTTTTGAGTGCGAGGTTTGCAAGGCTACCTTCGTCAGGAAGACTAATCTGCAGACGCATATCACGTCCGCGCACATGAACGAACGGCCGTATTGTTGTAATATTTGTAACAAGAGGTTTAAGCAGATTAGTCATTTAAATGGACATGTTATTGTGCATAGTAACTCTATGCCGTTCCAGTGCGATTATTGCGAGAGGAGGTGTAACAGGCTGGATAATCTGAAGAAGCATATGAAACTGCATGAGAAGAATAAAGGGGTATGA
Protein Sequence: MNNIHSELMLKNEAKEIEESIHLQESTPQQISQINEKAEVHVIDLRNDLDNNKNNPHKYFLVYIEAYSSYSVLKPLRLNNDDEIAENLLDIFSIIGSPAIINYHNKNHTEKLSEVLKTYTTPIFNVKVEQHGNKEGAISLKNHFEKQLFDWTKENPDKPLQIGLKFLQMMKNNRINPLTNKSPFQVLFNQLITLDNQFPFKPEYSPKTGATKEIPNDSKSPRKRTNTKQPSKPSPCTPSPLTCPHCSQKFTFPSVLKRHLRSHTNERPYVCEICNKTFKQLGHLSQHCLTHDFPTSQCTICSTKFESLEHLKTHLSENHRNKRGTPTKSIFQCDVCKKVFMTKSVLERHILTHTHERQFDCKICGKRFKQAGHLKSHTLVHTGERKFACSICSKRFTLSNSLKKHMYVHNGEKPYQCDVCGSRFLERRNLNGHLMTHTNERPFGCKICGKRYTLADTLRRHISVAHENGRTYQCEICAKMFKQLAHLSVHKKVHTDERPFQCHLCDKNFKHKNVLKSHLAIHANVRPFECEVCKATFVRKTNLQTHITSAHMNERPYCCNICNKRFKQISHLNGHVIVHSNSMPFQCDYCERRCNRLDNLKKHMKLHEKNKGV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00438918;
90% Identity: -
80% Identity: -