Dall011613.1
Basic Information
- Insect
- Diachasma alloeum
- Gene Symbol
- -
- Assembly
- GCA_001412515.3
- Location
- NW:8693-201029[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.4e-11 1.3e-07 30.5 0.3 12 71 235 292 229 295 0.82 2 2 0.82 3.2e+03 -2.8 0.0 7 27 353 372 349 376 0.72
Sequence Information
- Coding Sequence
- ATGGATATACAAGTCAGTGATACGAATGGCGGGAACGCCGAGGTGGCGCGCACGGAATCTAACCTGCAAGCAATTGTGGAATCTAAGTTAATGGCAGAGCAAACTCTTAACTCAGATAAATTACAAAGTGCAAAGAAAATGGACGAGGATGAGGTAAATGGTGAGGATAAGAGTGTTGGGAAGAAGTTGGAGTCAGCGGGGAAAAGAAGAATGCGTCAATCAAAGTCAAATTCGACTAGTAGTGTGGAAGCTGACGCCAAGCCTAAGGCTAAGGGAGTTAAGAGAAAACTCTTGGAGCCGGATGGTATTAATGAAGATGAATCTGCAGAGTTTGTTGGTTTTTCATCGGAGAgtatcattattattgagaCTGGATTGCAAATTCTTCAGAAACTTATTGTGGAAGCAGAATTGGAAGAATCCAATGCTATAAAACGTCGGCGGGCATCTTCGAAAGGAATTCAGAAGAACCTTCTGTCAAAAATAACTGCTGAAAGCCTCGAAAAAGAAACTACTGACGATAATAAGAGTATATCAATAACTTCCGAAGAAAAGCCAAAAATAAAAGACGATAAAGAGCCCAAGAAAATCGACACCATTACAACAGATCCGCCAAATTTTTGCAACAACCCCGAATCTAAGGGAGCATCTAGTAACAGTCAGAACGTTGATATGTCGAATCCCCTGTATAAAGAGCCCTTCAAATTTGGTTGGAAGCGTGAAATGATTTACAAGGGTGGATTTGAAAGTACTGCAAAGAAATCGGCAGACATTTATTATTACTCTCCCAAGGGAAAGAAAGTTAAGAGTCTTCGAGAAGTTGCAGAGTGTTTGACAACAAAGGAACTTTCTTTAGACAACTTTACGTTTTATAAAGAGCCAATTGGTATTGACGACCCTTCTATGGAAGTGATTAGGGACGCGAAGAGGCTTAGATCAGAATCGGCAGGTGGTCAAGTCACACCTACAAAAAAAAGCTTGAATAAACGTTCATCGCTCACTAGGAAAGTGCTGACACCACCTCCATGTCCACCTAAAACTGTCAAGATCTCGCCTTCCAAGGGCACGACTCCTGCAGGATTCAAGGTCAAAGTTGCGAGCAAGCGAGGGGCTCAAAAGAAGGAAGTGAAACCATCAAAAGAAACTGAACAACGGCCACCCCAGTGGAGTTCTCACAATGTGACAAGAAAAAATCAGGCAGCTGCTGAAAAAGTTACATCCCCAAAAAATAAAAGGATATTGAGCAGAGCCAAACTCCAGGAGCCCTGCAGCATTCGATGTTCGATGAGCATGGGTCTCATTCCAAGTCTCCAGTGTCGCATTTGTCTATGTTTATATCATCCAGAGTGTGTTGGTGGAAAAACTATATCAGCTAACGAGGAATACGTCTGCAAGAATTGTCAAATGGAGTTAGAACCAAGTGAACGTCATCAGCAACAACCGTTGATAACGCCACCAGCGTTGATACCAATAAGCATGTTAGGCTCTCACACCATAAAATCGAAGCTCCCAAAGCCCCACCAATCGTCAAAACCAGAGACTGAAGAACCCCTAAAAGACAAAATCCCCATGTCAAACTTATCAGAAGTTCCTTCAGTCATTGACAACGTAGATACTTCACTAAGTTCCTGGTTTTCTCCCCCAgggaaaaaatttcttcataatcATGGTGGATGCAAACTTCAACCTGCCCAAAATATTGCAAAAATGGGGGGGAAACGTTACATTGTTGTTCCCAAGAACAATGATATGGCTGTGCAACCAGCAATTCCCATCAGACCTGACCGAACGGTCGAAAATCAAAGAGATtttattcgagaaaattcattgattaataTAAATTTGAGTACAGAGAACTCGATTAGCAGTCGAAGATCCTCTCAGTCAGGTGTGAAGTATACTCCAGACAAAGAGAACGAAATAACTAAGAAAGTGGCTGAAGCAATGGACGTCGAAAGTCCTTTGAATGATTCAATCAGCAAAGATATGGGGATTTGTTGTAACAAAGTGAAAAGCAGCGGGGTTGAACCTGCTGTGCAGACAATGGAAGTACACATGGATGTGGAGGCTGTTGAACTagataaaaatttggaaattgaatGGTTGGATGGTTCACGTCTGCCACCGGCTGAGTCATTAAATGGGTCACATTCGTCACAGATTGAGCCTATGATTGCGCTGACAAATAAAAATGAGGTGGAGAGTGAAATGGCTGAGGAAAGAGGGGAAAAAGTGGAATGTAATAACAAAGTTCAAAAAGCAATGGAGACTCCACTTCTGCCTCCTGAGAATCAGAAAAACGAAGAGGTTGAGAATTTTAACACAAAATGTGATAGCAGCACTAAAAAGAAAATTCCTCCAATGGAGGTAGACCCAAAGCAATACTTTATGGTATCAGTGTGTGCAGGATATCACGCATTATCCCGCATCTTTCAGTACCTGAAGGTTCAGGAGCTCCTTCGTGCGGCTCGAGTCTGTAGAATGTGGAGAGATTTGGCAGCTCATCCAGCACTCTGGAAAACAGTGAGGATGAAGAACAGTCAGGTAGCAGATTGGGATGGGTTGGCAGCATCTCTAAAGCGCCATGGAACACAGCACTTGGACTTGAGAAAGATGTTAGTAGCCGGAGAGGCGGATAATATTTGGGACAAATTTGTTTCCATCCTCCCTAATGTTCCAAGTTTAACGATCTTGGAATTATGCAGATGTCCAGCGTCTGTTGTCGAGGAGATATTCAAATGCTGTCCCCAGTTGGAGGTAATGAGTGCAATGGCGATCAAATGCGATGCACTCAATATCGAGTCTCTAGGGAATGTCAAACATCTGAAGGAATTGAAACTCAAGGCAATCAGTGGAATGTCACTTCAGGAGGATTTCTCGCCACTGGGCGAACTCAAACACTTGACGCAACTGAATCTAACGTCAGTCAAAGAacttggaaagaaaaaaattgaagtccTCGGAACTTTGACTAGCCTGGAGACTCTGGAACTTGGAGAATGTTCCGATTTCCCCGATCGATTTGGGACTGATGTACTTTTGAAGCTGACTAACTTGGAGAGATTGAGATTGGAGAAAGGGCAGGGCTCTTGTTGCACTTTCGATATTCTGGAGGGGGTCTCCAAGCTGGGAAACCTTCGTCAGCTCGAGCTGGTGAATTTTGATGTGAAAAATGGATTCGATAAGTGTCTAGCTAATTGCAAGAATATCAAAAGACTGCTGATTATTCCTACGTATATTTCACAATCGGCTACTTCGAATAATATGGTCCTGGGGGGAGTCACTAAGTTGAGCGATAATCTAACGCACTTCGTGTGGGGAGTTACGCTGGAGTTGTTGAGAGTTACTGAGCTGTTTGTCGATcagtgtaatcaaatgaataaGCAGGTCTCTGGCGACTCCATTCCGGTGCTGAAGCCGGTTCCTTGTTTGAAGTTGATTGAGGATATTGAGGTGAAACAGGATGCACCAAAAGAGGAGAGACAATCAACCTTAACAAATCCACAAGTGGACATTCTTCCCCTCCCTCAACTTCAAAAACTATTACTTACTGCATTGCCCAAAACCAGagtgaaaatattgaagatCCCGTTCCACGCAACCTGGAGGCAGAGTATATCTGACAACACATCGCCGTAA
- Protein Sequence
- MDIQVSDTNGGNAEVARTESNLQAIVESKLMAEQTLNSDKLQSAKKMDEDEVNGEDKSVGKKLESAGKRRMRQSKSNSTSSVEADAKPKAKGVKRKLLEPDGINEDESAEFVGFSSESIIIIETGLQILQKLIVEAELEESNAIKRRRASSKGIQKNLLSKITAESLEKETTDDNKSISITSEEKPKIKDDKEPKKIDTITTDPPNFCNNPESKGASSNSQNVDMSNPLYKEPFKFGWKREMIYKGGFESTAKKSADIYYYSPKGKKVKSLREVAECLTTKELSLDNFTFYKEPIGIDDPSMEVIRDAKRLRSESAGGQVTPTKKSLNKRSSLTRKVLTPPPCPPKTVKISPSKGTTPAGFKVKVASKRGAQKKEVKPSKETEQRPPQWSSHNVTRKNQAAAEKVTSPKNKRILSRAKLQEPCSIRCSMSMGLIPSLQCRICLCLYHPECVGGKTISANEEYVCKNCQMELEPSERHQQQPLITPPALIPISMLGSHTIKSKLPKPHQSSKPETEEPLKDKIPMSNLSEVPSVIDNVDTSLSSWFSPPGKKFLHNHGGCKLQPAQNIAKMGGKRYIVVPKNNDMAVQPAIPIRPDRTVENQRDFIRENSLININLSTENSISSRRSSQSGVKYTPDKENEITKKVAEAMDVESPLNDSISKDMGICCNKVKSSGVEPAVQTMEVHMDVEAVELDKNLEIEWLDGSRLPPAESLNGSHSSQIEPMIALTNKNEVESEMAEERGEKVECNNKVQKAMETPLLPPENQKNEEVENFNTKCDSSTKKKIPPMEVDPKQYFMVSVCAGYHALSRIFQYLKVQELLRAARVCRMWRDLAAHPALWKTVRMKNSQVADWDGLAASLKRHGTQHLDLRKMLVAGEADNIWDKFVSILPNVPSLTILELCRCPASVVEEIFKCCPQLEVMSAMAIKCDALNIESLGNVKHLKELKLKAISGMSLQEDFSPLGELKHLTQLNLTSVKELGKKKIEVLGTLTSLETLELGECSDFPDRFGTDVLLKLTNLERLRLEKGQGSCCTFDILEGVSKLGNLRQLELVNFDVKNGFDKCLANCKNIKRLLIIPTYISQSATSNNMVLGGVTKLSDNLTHFVWGVTLELLRVTELFVDQCNQMNKQVSGDSIPVLKPVPCLKLIEDIEVKQDAPKEERQSTLTNPQVDILPLPQLQKLLLTALPKTRVKILKIPFHATWRQSISDNTSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00438756;
- 90% Identity
- -
- 80% Identity
- -