g29396.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML015359.1:26956-50097[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.23 1.4e+03 2.2 0.1 26 37 122 133 110 145 0.74 2 5 2.2 1.3e+04 -0.9 0.0 23 44 149 170 144 174 0.80 3 5 0.0002 1.2 12.0 0.5 21 45 175 199 167 202 0.87 4 5 0.00012 0.74 12.7 0.0 21 52 203 234 199 235 0.89 5 5 0.012 72 6.3 0.0 21 48 231 258 229 262 0.89
Sequence Information
- Coding Sequence
- ATGGATATGAGCGATGATGATGACTTTCACCCATCTTTGGAACCTGTAGTGATAATAAATGATGAGGATGATTTGGAAGAGGATTGTGGAAGTGATTCGGATCCACTAAGTGGATGTGATTCAGAAAATGTAAGAATAATAAATTCAATTGGACCAGAGATTTCAATTATACCTGTTAGAAAGAAAAAACCACAGTTTAAGATAAGATTGTTTCAAAAAGAATTTTCTCCATCGAGTGATGATATCAACACTAAAGTTCACAGCATTACTAGatcTCCAAGAGAAAAAGTGCGATTAGTGTCCCAAGATGAAGCTCAAAGTGCAGGCGAAACATACACCAAAAGAAAATCCAGTCCTTTAGAAAAATGTCcaatatgcaaaaaatttttcaGAAGAATGAAAACTCATTTACTAAAACATGATATTTTAACTAGATCTCCAGAAGAAAGCCTCTATTGTAACTTATGTCACAAAACTTTTAATACTGCAAGCAATCTTGCAATCCACATGAGAACTCATTCTGGGGAAAGGCCACACACATGTGAAGTTTGCAATAAGTCATTTTCACAAAGTTGTAATCTAGTCAATCATATGAGGGTTCACACAGgtgaaaaaccctttaaatgcCCTCACTGTGACAGAGCATTTACACAATCAGGTAATCTCAACAATCACATTCGTCTCCATACAGATGAAAAGCCTTTCCAATGTCATTTTTGTGACAAAGCTTTCGTTCAATCAGGAAACCTTAGTTCTCACATTAGGAATAATCATAAAGTTGCCACTGATATCTCATTCCATTCTTTGGCTGAAGTATTGTAG
- Protein Sequence
- MDMSDDDDFHPSLEPVVIINDEDDLEEDCGSDSDPLSGCDSENVRIINSIGPEISIIPVRKKKPQFKIRLFQKEFSPSSDDINTKVHSITRSPREKVRLVSQDEAQSAGETYTKRKSSPLEKCPICKKFFRRMKTHLLKHDILTRSPEESLYCNLCHKTFNTASNLAIHMRTHSGERPHTCEVCNKSFSQSCNLVNHMRVHTGEKPFKCPHCDRAFTQSGNLNNHIRLHTDEKPFQCHFCDKAFVQSGNLSSHIRNNHKVATDISFHSLAEVL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00437452;
- 90% Identity
- iTF_00437452;
- 80% Identity
- iTF_00437452;