g7383.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML015032.1:2480346-2483180[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.0047 28 7.6 0.1 22 45 211 233 203 235 0.80 2 2 4.3e-07 0.0026 20.6 0.0 20 45 235 260 233 264 0.91
Sequence Information
- Coding Sequence
- ATGAATAACGTATGTAGAACTTGTCTCAGCACAACCAACCTTTTTCCGTTGAAAAATGATGATACACTTATAACAAAAATTGAAGtcatttcatcaatcaatATATCACTAGATAGTCCGAATCATCCTGCAGTTATATGTGCAGCCTGCATAGAAAAAGTCaataaattttattgttttcgAAAAATAATCATCAATAGTGACGTTGAACTTAGAGAAAAATGTGAAGCAataacaaattcacaaaataaAATTAGTACAAAAAGGACACGAAACAGTGGTAAACCAAGAAAGAGAGTATTAAAAAGGAAAAAAGTAACAAAGAAAGTTGAAAATGGAGATGAAATCAAAGCAGAACCAGCTGCTGAAGAAGATAGTGTCTTAGAGAGGTTATACATTCACGAAGATGACAATGCTGATCATGAGCAAACATTTAAAGAAGAATTAGAAGCACCTGATGTCAATTTCAATTGCAAGGAGTGTTCATTAACATTTGACACTAAAATAGAGttatataaacataataaaatATATCATAGACATAAGAAACCAAAACCATTAAACTGTGTTGAATGTAATTTAACATTTTCCTCCCAAAATGAACTAGCAAATCATAGACGAAATGTGCATACAGCTCCTGGAATTTGTAACATATGTGGTGTTGTTCTTAGAGCGGACAACTTGAAGAAACATGTTCAAAGACATTCAGAAGAACCCGTTACATGCAAAATTTGTATGAAAGTGTTAAAGAATTCAGAATCTTTAAGAGGTCACTTATTAATTCACAAAGGTACTTCATTTGAATGTGAGAAGTGTGATAAGACATTCAGACTGAAATCTGAATATCACAGGCATTTGAAAAAGCATGCAGGTGAGTTTTACTGTTAG
- Protein Sequence
- MNNVCRTCLSTTNLFPLKNDDTLITKIEVISSINISLDSPNHPAVICAACIEKVNKFYCFRKIIINSDVELREKCEAITNSQNKISTKRTRNSGKPRKRVLKRKKVTKKVENGDEIKAEPAAEEDSVLERLYIHEDDNADHEQTFKEELEAPDVNFNCKECSLTFDTKIELYKHNKIYHRHKKPKPLNCVECNLTFSSQNELANHRRNVHTAPGICNICGVVLRADNLKKHVQRHSEEPVTCKICMKVLKNSESLRGHLLIHKGTSFECEKCDKTFRLKSEYHRHLKKHAGEFYC*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00437558;
- 90% Identity
- iTF_00437558;
- 80% Identity
- iTF_00437558;