g51396.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML016017.1:74364-88681[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.023 1.3e+02 5.5 0.0 21 47 128 154 120 161 0.88 2 8 0.12 7e+02 3.2 0.0 22 46 185 209 180 215 0.89 3 8 0.066 3.9e+02 4.0 0.2 17 52 235 270 228 277 0.85 4 8 0.005 30 7.5 0.1 20 52 294 326 281 327 0.86 5 8 0.53 3.2e+03 1.1 0.2 21 43 323 345 319 349 0.79 6 8 0.0013 7.9 9.4 0.3 21 46 351 376 340 381 0.85 7 8 2.1 1.3e+04 -0.9 0.0 24 43 395 414 388 418 0.75 8 8 0.0048 29 7.6 0.0 21 46 420 445 414 447 0.90
Sequence Information
- Coding Sequence
- ATGGACGAAACCCTTGTTAAACAAGAAATATTTGAAGATATTTGTACACAACAATCAATACAAAATGAACAAGATGATTTTCTGCCAGTTGAGATTAAGATACAGCCTCAATGTGACTTAAATTACTTATACCAAACAAACAACGAAATAgacattaaaaatataaaaattgaagaaaataaaGATGAATATGATGAAgataagaaagTTGTGGAGAACATGCAAATTAAGAAAGAGTTGGAAGAATGTAATGAAGGACATCAAGAGAATCCGCAATCCACATCAGTAGATCTTGACGTTTTGAAGCTTGAAACAGAACAAAAAGATAACTCAGgTTTCCATGCTGACAAAAATGGAATAAAGCATAAGAAATTACATACTGtcgaaaaaccttacaagtgtgaaatctgttttaaacAGTTCACTCTAAAAGGTAATTTAAATATGCACATGAAACTTCACACAGATGACAAAGCTCATAAATGTGAAACATGCCTTAAGCAGTTTTCTCAAAAAGCACATCTGAAAGACCACATGAAAATGCACATTGgtgaaaaaccatacaagtgtaaCATCTGTTCTAAGCAGTTTACTCAAAAAAGTGGTTTGAAAGTACATATGAAAGTTCACACCGAAGAAAAAGCTGATCAATGTGAATTTTGCTTAAAATGGTTTTCGCGAAGAGAACAACTTAAAAATCATTTAAGAACGCACACTGGAGAGCCTTATAAATGTGACATTTGCTTGAAGGAGTTtcataaaagaaataatttaagtATTCATATGAAAATTCACGCTGAAgacaaaccttataaatgtgaagtTTGCCTGAAGGGTTTTTCTCATATAAGCAATATGATAAAGCATAAAAAagtgcacactggtgaaaaaccttaccagtgtgaaatttgttcgaGACATTTTTCTGAAAGCGGAACGTTGAGAGTTCATTTGAGAATGCACAGTGGTGAAAAGCCTTATCAATGTGACATTTGTTTGAAGCGTTTTTCTGAAGGAGCAACGTTGAGAATTCACTCTAGaatacatactggagaaaaaccatatcagtgtgaaatttgttttaagcgatttataCAAAATTGTAAATTAAATAGACATATGGATGTTCACGTTAAAGATAAAGACACTTCCTATCAAATAGACACACAAAGTGGTAAAAAAATGCACACTTGTGAAGTTTGTTTGCGTCAATTTAgtaaaaaaagtaatttaaatGTTCACACGAGAGTTCACACTGGAGAGAAACCTCATCAATGCGACATTTGTTTGAAACAATTTGGTCACAGTGGACATTTGAATAGACATTTGAAAGTTCACACTAGAGATTAA
- Protein Sequence
- MDETLVKQEIFEDICTQQSIQNEQDDFLPVEIKIQPQCDLNYLYQTNNEIDIKNIKIEENKDEYDEDKKVVENMQIKKELEECNEGHQENPQSTSVDLDVLKLETEQKDNSGFHADKNGIKHKKLHTVEKPYKCEICFKQFTLKGNLNMHMKLHTDDKAHKCETCLKQFSQKAHLKDHMKMHIGEKPYKCNICSKQFTQKSGLKVHMKVHTEEKADQCEFCLKWFSRREQLKNHLRTHTGEPYKCDICLKEFHKRNNLSIHMKIHAEDKPYKCEVCLKGFSHISNMIKHKKVHTGEKPYQCEICSRHFSESGTLRVHLRMHSGEKPYQCDICLKRFSEGATLRIHSRIHTGEKPYQCEICFKRFIQNCKLNRHMDVHVKDKDTSYQIDTQSGKKMHTCEVCLRQFSKKSNLNVHTRVHTGEKPHQCDICLKQFGHSGHLNRHLKVHTRD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00437333;
- 90% Identity
- iTF_00437333;
- 80% Identity
- iTF_00437333;