g55556.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML016195.1:330337-331467[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0062 37 7.3 0.1 23 45 205 227 196 234 0.87 2 4 0.014 83 6.1 0.0 23 45 257 279 252 282 0.87 3 4 0.055 3.3e+02 4.2 0.0 21 44 309 332 307 335 0.90 4 4 3.7e-05 0.22 14.4 0.0 20 46 335 361 333 364 0.92
Sequence Information
- Coding Sequence
- ATGGATCAAGAATCATGGACTGCTTTTCCATCtgttgatgatattaaaaaagAGTATAATGAACATGAGTCTGAACTGAATTATGTACTTAGGGATGATTTGGTGCTACCATTAATAAAATCGGAACAAGAATCAGCCACTGATGTATCCTCCATTCACATTAAAGAAGAGTGCATTGAGCTAAAGTGTGAACAGAATGATATTGAAAGGGATGACTTTGAAGGACCCCCAACCAAAGTGGAACAAGAACCACCAAATACTACTTTGTCCATTCAAATTAAAGAAGAGTATAGTGAGCTTAAGTCTGAACTGGATTATATACACAGAGATGATTTAGATTCGCCTCCTATTGAAATGGATGAAGGACTACCAACCAAAATGGAACAAGAATCACCAAATACTGCTTTGTCCATTCAAATTAAAGAAGAATATAGTGAGCTTCAGTCTGAACTGGATTATACACACAAGGATGATTTGGATTCACCTCCTACTGAAATGGATGAACTTAGTCAAATAGATGATAAAAGCTGTGATCTTTTagcacaatttaatttttttaatgatggCACAACTGAATGTTTATCAGAAGAATCACCATTAAGTACAGATCTTAGACCATTTACTTGTGAAATTTGTTCAAAGCGTTATGTCCACGAACGGAGCTTAAAGCGTCACATTAAGGACCCAGCATTTAAATGTAATATATGTGATAAACATTGTAGTAGTCAGATCAGTCTAGATCTACATATTCTCGCACATAGTGGTCAAATGCCCTTTAAATGTCACTTGTGTGTGAAACAGTTCAAGAGAAAACGTAATTTGAAATCTCATTTGAGTTCACATCTAGGTGTCACTAAATGCAAGTATTGCGAAAAGCAATTCGAACGTAGAGATATTTTGCAATATCATATTATACTTATACATagtgaaaaaccttttaaatgtAAGGTGTGTTCGAAACAGTTTAGGTTAAGGAAGCAACTAATGTCTCATTTAGTTGTACACAGTGAAGGTCCATTTACTTGTGATGTGTGTTCAAGAGGATTTAGACAAAAACGCAGTCTAGAAAACCATTTGTTGTTGCATGCACCAGATTTAGTGAAAACTGTAGCTTGTAACATACCAATTTAA
- Protein Sequence
- MDQESWTAFPSVDDIKKEYNEHESELNYVLRDDLVLPLIKSEQESATDVSSIHIKEECIELKCEQNDIERDDFEGPPTKVEQEPPNTTLSIQIKEEYSELKSELDYIHRDDLDSPPIEMDEGLPTKMEQESPNTALSIQIKEEYSELQSELDYTHKDDLDSPPTEMDELSQIDDKSCDLLAQFNFFNDGTTECLSEESPLSTDLRPFTCEICSKRYVHERSLKRHIKDPAFKCNICDKHCSSQISLDLHILAHSGQMPFKCHLCVKQFKRKRNLKSHLSSHLGVTKCKYCEKQFERRDILQYHIILIHSEKPFKCKVCSKQFRLRKQLMSHLVVHSEGPFTCDVCSRGFRQKRSLENHLLLHAPDLVKTVACNIPI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00437503;
- 90% Identity
- iTF_00437503;
- 80% Identity
- iTF_00437503;