g90046.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML019400.1:18794-19918[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 5.2 3.1e+04 -2.1 0.0 22 34 28 40 26 54 0.71 2 10 0.0082 49 6.9 0.0 21 46 55 80 52 91 0.83 3 10 1.6 9.5e+03 -0.5 0.1 20 32 110 122 94 133 0.80 4 10 0.067 4e+02 3.9 0.1 17 46 136 165 123 173 0.71 5 10 0.85 5.1e+03 0.4 0.1 22 44 169 191 159 195 0.83 6 10 0.073 4.3e+02 3.8 0.0 21 47 224 250 216 255 0.84 7 10 0.008 48 6.9 0.0 21 45 252 276 250 284 0.87 8 10 0.17 1e+03 2.6 0.0 22 44 281 303 277 307 0.87 9 10 6e-05 0.35 13.7 0.0 21 44 308 331 300 335 0.87 10 10 0.012 69 6.4 0.0 22 45 337 360 334 366 0.88
Sequence Information
- Coding Sequence
- ATGCATTACAATGAATATATATTTATCGTTTTAGGTTCCTCATATGAAGATTTACAAAATGGTTCATTAAATAAATTCAAGGAAGATCCTCTGAAATGCGAAGTTTGTTTGAAACAGTTCACAACGAAAAGTAGTGTAAAGATGCATATGCTTTTGCATACCGGAGAAAAACCATTCCAGTGCAAATTTTGTTTGAATTGGTTTAGACACAAGAGTAATTTAAAGAACCACATGCAGACTCACACAGGAGAAAGACATTTCGAATGTGGAGTATGCTCGAAGCGGTTTCCAACAAAATATAAGTTAAGGCTGCACACACATCGTCATACCGGAGCCAAACCTTACGAATGCGATATTTGTTTCAGGCGGTTTTCTCGACCTAGTCATGTAGCAGGCCACAAAACTAGTTTACACAGCAGTGACAAACCTttcaaatgtgaaatttgttttaaacagttttcagCAATCAGTTTATTGGAAAAACATGTACGATTTCACATCGAACAAAAACCTCACGTATGTGAATATTGCTCCAAACACTTTTCGTCAAGTTCGTCTTTAAGGGTGCATATGCGCACGCATACCGGGAATAGAGTGTTAAAATGTGAAATTTGCTCTAAAGAGTTCAAAACAAATTCTCATCTAAAGGTGCACATGCGAAATCACAcaggagaaaaaccgtacaaatGTGAAGTTTGTTCCAAGGAGTTTACACAAATGGGACAATTAAGCAGACATACTTTattgcatactggagaaaaaccgttcAGTTGTGAAGTTTGTTCAAAGAATTTTAGACAGAAAAGTGCTTTGAAAACTCATATGCAAAATCACACTGATGATAAACCTTTTGGTTGTGAAATTTGTACGAAGGTATTTACAACTAATTCTCTGTTGAAAAAGCATATGAGAACCCATACAGgagaaaaaccttttaaatgcgagatttgttttaaggAGTTTCGAGACTCTGCAGAATTGAAGAGACATATTTTaatgcatactggagaaaaaacATTCAGTTGTGAAATTTGTTCGAAAAATTTTAGAGAGAAGAGAGCCTTAAAAAAACATATGCAAAATCACGTCAAAGATAAATCTTCTCCATCAGGTTCTCCTCCCTAA
- Protein Sequence
- MHYNEYIFIVLGSSYEDLQNGSLNKFKEDPLKCEVCLKQFTTKSSVKMHMLLHTGEKPFQCKFCLNWFRHKSNLKNHMQTHTGERHFECGVCSKRFPTKYKLRLHTHRHTGAKPYECDICFRRFSRPSHVAGHKTSLHSSDKPFKCEICFKQFSAISLLEKHVRFHIEQKPHVCEYCSKHFSSSSSLRVHMRTHTGNRVLKCEICSKEFKTNSHLKVHMRNHTGEKPYKCEVCSKEFTQMGQLSRHTLLHTGEKPFSCEVCSKNFRQKSALKTHMQNHTDDKPFGCEICTKVFTTNSLLKKHMRTHTGEKPFKCEICFKEFRDSAELKRHILMHTGEKTFSCEICSKNFREKRALKKHMQNHVKDKSSPSGSPP*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00437309;
- 90% Identity
- iTF_00437309;
- 80% Identity
- iTF_00437309;