g43075.t2
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML015719.1:556244-564145[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.33 86 6.6 5.1 1 21 138 158 138 159 0.94 2 12 0.034 8.9 9.7 1.5 1 23 167 189 167 189 0.98 3 12 0.0021 0.55 13.5 3.0 1 23 207 229 207 229 0.98 4 12 1.8 4.6e+02 4.3 0.9 1 23 256 277 256 277 0.87 5 12 9.4e-05 0.024 17.7 0.7 3 23 285 305 283 305 0.96 6 12 0.00041 0.11 15.7 0.4 1 23 311 333 311 333 0.93 7 12 2.2e-05 0.0057 19.7 2.3 1 23 339 361 339 361 0.98 8 12 1.1e-05 0.0028 20.7 3.6 1 23 367 389 367 389 0.97 9 12 0.00037 0.097 15.8 5.0 1 23 395 417 395 417 0.98 10 12 1.8e-06 0.00047 23.1 0.4 1 23 423 445 423 445 0.98 11 12 4.5e-05 0.012 18.7 0.1 1 23 449 471 449 471 0.98 12 12 0.0002 0.053 16.7 0.1 1 23 479 502 479 502 0.96
Sequence Information
- Coding Sequence
- ATGGAGTGTGATTCCATGCACGCAACTATCGAACGGAAGCTTAAAAATAGGGAAATTTACTCTCCTTCAAGCTACGAAGCAGCTATCAGATCAGCCAGACTACATCCTAAGCCATACAAAcaaactGATGTATTTGATGAAAATGATTTACCCCAAGAAATGCAAGTAGAAGAAGATCAAGTTACTGAATATTCTCAGGAGGAAGAAAGTTTTGAATTAAGTCAAGAATCTGGAAATGATGAAAATGAAAGGCCCGTAATACAAAAGAACAATAAACGAGTAGATTGGGTTTCCAGAAAAGATAATGTTATCCCTTTAACCGAAAATTATGCTATAGAGAATGGTAAAGTAAGAAAAATAACTGAGAAGGAAGCAGCTGAAATAAGTAATAGAAGTTCTATATTCCAAATTCACCAATGCCCTAAATGTTTCTTACAATTTCCTAAACTAGATCATTACATCAAACACAAATGTTCTGCAAGCAGGAAGACAAAGCAGTTTAAGTGTGCTCATTGTACAGCAGTGTTCTTAACCTACCCATCACTTAATACGCATTTGAAGTTACACCTACAGCCTCAACCAGAAGAATCCAAACATAAGGTGATCACATTAAATCCCCACAGGTGTAATACATGTAACACACTGTTCCCATCATTAAAAAGCCTTAGACTTCACTTAAAGATGCATGAGCCTGTTAAGATAAAACCTGTAGAACCTCCGGTAGATAATGATTTGGCTGATGgtgagaaaaaagaaagaaagatATTTGTGTGTCATATCTGCAACAATCCTTATGATCTTGAATATGAACAAGTTCATATGAAGTCACACTCTGAAGAAAAAAATTTGTTCTGTACTACATGTAATAGAGAATTTATGAGCCAAGAAAATTTAGAAATGCACATGAAAGCTCATAATAATACAAAAACTTTTGTTTGTTCATATTGTAAAAAAGCTTATAATACTTCTACAGCTTTAGAAGATCATGAAGTAAATCATTGCTTGCGCAGAAAGTATGAATGCCAGTATTGTGGTAGACGCTTTTCTAGACCACATGAGAAGGTAAAACATGAAAGGATTCATACTGGTGAGAAACCACATATTTGCCAAGTATGTGGCAAAGGATTTAGAGTCAGCTATTGTCTGACCCTACACATGAGAACTCATTCTGGTTCAAGACCTTATGAATGCCCACAATGCAAGAAACGATTTAAATCTCATAGTGTTTACAATCATCACTTGCTAATACACTCCGATGTAAGAGCCTATAAATGTCCTTACTGTCCCAAAGCATTTAAAACAAGTGTCCAGTTAGCTGGGCATAAAAATAGCCATATAAAACCCTTTAGTTGTAATGAATGTAACAGACCATTTGCGTCTCTGTATGCTGTCAGAGCCCATATGGAAAGCCACAAAAGAGAAAATAATTTGAAGTTTGACTGCTGGCTGTGTGGTGCAACATATGCTAGAGCATTTGCTTTAAAGGATCACATGAAGAGTCAGCATGCTGATGAAAATGTTGATGCAGGAGCATTAGCTGAGCTTGAAACTGAGGAAACTGTCTTTGTAATTAAAGAAGATTCAGAAGAGAAGCAAGaagtataa
- Protein Sequence
- MECDSMHATIERKLKNREIYSPSSYEAAIRSARLHPKPYKQTDVFDENDLPQEMQVEEDQVTEYSQEEESFELSQESGNDENERPVIQKNNKRVDWVSRKDNVIPLTENYAIENGKVRKITEKEAAEISNRSSIFQIHQCPKCFLQFPKLDHYIKHKCSASRKTKQFKCAHCTAVFLTYPSLNTHLKLHLQPQPEESKHKVITLNPHRCNTCNTLFPSLKSLRLHLKMHEPVKIKPVEPPVDNDLADGEKKERKIFVCHICNNPYDLEYEQVHMKSHSEEKNLFCTTCNREFMSQENLEMHMKAHNNTKTFVCSYCKKAYNTSTALEDHEVNHCLRRKYECQYCGRRFSRPHEKVKHERIHTGEKPHICQVCGKGFRVSYCLTLHMRTHSGSRPYECPQCKKRFKSHSVYNHHLLIHSDVRAYKCPYCPKAFKTSVQLAGHKNSHIKPFSCNECNRPFASLYAVRAHMESHKRENNLKFDCWLCGATYARAFALKDHMKSQHADENVDAGALAELETEETVFVIKEDSEEKQEV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00437364;
- 90% Identity
- iTF_00437364;
- 80% Identity
- -