g43075.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML015719.1:556244-566748[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.24 62 7.0 1.7 2 20 7 26 6 28 0.88 2 15 0.19 50 7.3 0.0 2 21 34 53 33 54 0.91 3 15 2.9 7.5e+02 3.6 0.5 1 12 126 137 126 146 0.82 4 15 0.41 1.1e+02 6.3 5.1 1 21 251 271 251 272 0.94 5 15 0.043 11 9.3 1.5 1 23 280 302 280 302 0.98 6 15 0.0026 0.69 13.2 3.0 1 23 320 342 320 342 0.98 7 15 2.2 5.8e+02 3.9 0.9 1 23 369 390 369 390 0.87 8 15 0.00012 0.031 17.4 0.7 3 23 398 418 396 418 0.96 9 15 0.00052 0.13 15.4 0.4 1 23 424 446 424 446 0.93 10 15 2.7e-05 0.0071 19.4 2.3 1 23 452 474 452 474 0.98 11 15 1.3e-05 0.0035 20.4 3.6 1 23 480 502 480 502 0.97 12 15 0.00047 0.12 15.5 5.0 1 23 508 530 508 530 0.98 13 15 2.3e-06 0.00059 22.8 0.4 1 23 536 558 536 558 0.98 14 15 5.6e-05 0.015 18.4 0.1 1 23 562 584 562 584 0.98 15 15 0.00025 0.066 16.4 0.1 1 23 592 615 592 615 0.96
Sequence Information
- Coding Sequence
- ATGGGTACACAGCTTTTAAAATGTCCTTTATGTTGTAATGAACATTTTTCTTCCCGTCAGGATTTAAAGTATCATATAAGCGAGTTATTAAATAGTTTGTCTTGTCCAGTTTGTACTTTAGCTTTTAATAGTGTTATTGAATTAGCAGAACACCTAGACACGGAATGTGAACTTAGTGAAGAGTGTAACCAAAATGAAACTGATCCTGAAATCCAAATCCAGGAGCCTTCAGATCCATTGTTGATCCCAGTGGACGAATCACAAGAAGAACCTACAGATGAACATGTAGAAATGGTGAATGATGATACTCAGCAGATCGAATTTATTGAAAGTGAGGATATTGCTGAAGAAGTGGAGGAGAATGGAAATGTTATCTATGAGTGTGAAGTTTGTAAAGTTCAATTTAGCTCAATTAAAGATCATTTAAAAGAGTACCATGCTGGAGAAGATGTTGTGCTGcaaactGATGTATTTGATGAAAATGATTTACCCCAAGAAATGCAAGTAGAAGAAGATCAAGTTACTGAATATTCTCAGGAGGAAGAAAGTTTTGAATTAAGTCAAGAATCTGGAAATGATGAAAATGAAAGGCCCGTAATACAAAAGAACAATAAACGAGTAGATTGGGTTTCCAGAAAAGATAATGTTATCCCTTTAACCGAAAATTATGCTATAGAGAATGGTAAAGTAAGAAAAATAACTGAGAAGGAAGCAGCTGAAATAAGTAATAGAAGTTCTATATTCCAAATTCACCAATGCCCTAAATGTTTCTTACAATTTCCTAAACTAGATCATTACATCAAACACAAATGTTCTGCAAGCAGGAAGACAAAGCAGTTTAAGTGTGCTCATTGTACAGCAGTGTTCTTAACCTACCCATCACTTAATACGCATTTGAAGTTACACCTACAGCCTCAACCAGAAGAATCCAAACATAAGGTGATCACATTAAATCCCCACAGGTGTAATACATGTAACACACTGTTCCCATCATTAAAAAGCCTTAGACTTCACTTAAAGATGCATGAGCCTGTTAAGATAAAACCTGTAGAACCTCCGGTAGATAATGATTTGGCTGATGgtgagaaaaaagaaagaaagatATTTGTGTGTCATATCTGCAACAATCCTTATGATCTTGAATATGAACAAGTTCATATGAAGTCACACTCTGAAGAAAAAAATTTGTTCTGTACTACATGTAATAGAGAATTTATGAGCCAAGAAAATTTAGAAATGCACATGAAAGCTCATAATAATACAAAAACTTTTGTTTGTTCATATTGTAAAAAAGCTTATAATACTTCTACAGCTTTAGAAGATCATGAAGTAAATCATTGCTTGCGCAGAAAGTATGAATGCCAGTATTGTGGTAGACGCTTTTCTAGACCACATGAGAAGGTAAAACATGAAAGGATTCATACTGGTGAGAAACCACATATTTGCCAAGTATGTGGCAAAGGATTTAGAGTCAGCTATTGTCTGACCCTACACATGAGAACTCATTCTGGTTCAAGACCTTATGAATGCCCACAATGCAAGAAACGATTTAAATCTCATAGTGTTTACAATCATCACTTGCTAATACACTCCGATGTAAGAGCCTATAAATGTCCTTACTGTCCCAAAGCATTTAAAACAAGTGTCCAGTTAGCTGGGCATAAAAATAGCCATATAAAACCCTTTAGTTGTAATGAATGTAACAGACCATTTGCGTCTCTGTATGCTGTCAGAGCCCATATGGAAAGCCACAAAAGAGAAAATAATTTGAAGTTTGACTGCTGGCTGTGTGGTGCAACATATGCTAGAGCATTTGCTTTAAAGGATCACATGAAGAGTCAGCATGCTGATGAAAATGTTGATGCAGGAGCATTAGCTGAGCTTGAAACTGAGGAAACTGTCTTTGTAATTAAAGAAGATTCAGAAGAGAAGCAAGaagtataa
- Protein Sequence
- MGTQLLKCPLCCNEHFSSRQDLKYHISELLNSLSCPVCTLAFNSVIELAEHLDTECELSEECNQNETDPEIQIQEPSDPLLIPVDESQEEPTDEHVEMVNDDTQQIEFIESEDIAEEVEENGNVIYECEVCKVQFSSIKDHLKEYHAGEDVVLQTDVFDENDLPQEMQVEEDQVTEYSQEEESFELSQESGNDENERPVIQKNNKRVDWVSRKDNVIPLTENYAIENGKVRKITEKEAAEISNRSSIFQIHQCPKCFLQFPKLDHYIKHKCSASRKTKQFKCAHCTAVFLTYPSLNTHLKLHLQPQPEESKHKVITLNPHRCNTCNTLFPSLKSLRLHLKMHEPVKIKPVEPPVDNDLADGEKKERKIFVCHICNNPYDLEYEQVHMKSHSEEKNLFCTTCNREFMSQENLEMHMKAHNNTKTFVCSYCKKAYNTSTALEDHEVNHCLRRKYECQYCGRRFSRPHEKVKHERIHTGEKPHICQVCGKGFRVSYCLTLHMRTHSGSRPYECPQCKKRFKSHSVYNHHLLIHSDVRAYKCPYCPKAFKTSVQLAGHKNSHIKPFSCNECNRPFASLYAVRAHMESHKRENNLKFDCWLCGATYARAFALKDHMKSQHADENVDAGALAELETEETVFVIKEDSEEKQEV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00437372;
- 90% Identity
- iTF_00437372;
- 80% Identity
- -