g52268.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- MBD-R2
- Assembly
- GCA_003013835.2
- Location
- ML016048.1:368603-373773[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.3e-14 7.1e-10 41.1 0.1 8 72 532 593 525 598 0.89
Sequence Information
- Coding Sequence
- ATGGGGCGTAAATGCAACGTAAAAGGATGCCCGTCTGCTTCGAATCGTTCCAAAGATGAAGGGGTAACATTTCACAAGATTCCCCCTCATATGGACGTTAGACCAAAGTGGTTGTCGTTGTGTAGAATACCCGAAGATAAAAAGAACATAAAGATACTCTATGTATGTTCCAGACATTTTCTTCGAGCtgatttttgtaatttcaaaggtaAAAAATATATGCTCAAGCATGGAGTGTTGCCCAGTGTGTTCCCATGGGATAAATCAAAGTTGGAGGCTATTAAGGCAGTGGTTAAGAATGAAAAAGTTGTCAAAAAGGACAAAACGGAAGCTAAGGAGAAACCTTCTACCAGTATTAGACCCGAACAAGACATTTTACAAGACAATAGGATGGAAGAAGACAATTCTGATATTAACCAAGAGAATGACATGGGTGAAGATAAAATGATGGATGAAAGTATGACAGGAATTTCAAGACCTGAGAAACAATTGCCATCATCAATTCCAGCAACTTTAAACTTCGCAATAAATTCATATGTTGAGGCTCTAGATTTTAATAACGAATGGTGTCTGGCCAAAATAATGGAGACAGACGAAGAAGAAAAGGAGGTTCTaattcattttattgatattcCCAGTAAACATGATGAGTGGATTTCCATGAATAGTTCTCGACTAAGACCTGCACAAAACGTAGACTTGAATCATTCTGCAAATCCTGTTGTAAGCTTGGAATCAGATATCGACCAAACTTCAATTGTAAATACAATTCCAATTGAAGCTTCAATATCAACTGAAGCTGAAAGTTCAGTTTTACCCACAAGTTCAGTAATAAGTACAATTGAAAATGTCAGTATTTTACCTTCTGCGCCCATAGCTTCAGCTACTGTTTCCACAGTTTCTACTGTTTCCACAGTTTCACTTTCACCTACTGTTTCCACAGTTTCACCTACTGTTTCCACAGTTTCACCTACTGTTTCCACAGTTTCACCTACTGTTTCCACAGTTTCACCTACTGTTACCACAGTTTCACCTACCGTTTCCACAGTTTCTCCTACTACTTCCACTGTTGCAAGTGAAACTAATGTCAAGAAAGAAGTTGAAGTGGAAACCTACGTTGTAGGTGAGAGATGCCTTGCTGCCTGGAGTGACTGCAGAAAATTCCCAGCTACAGTTTCCAAAGTACTCGAAAATGATACCTATGAGGTAATCTTCGATGATGGTTTTCCAAAAGTTTTAAAAGCTCATCGTATGGCTAAGGCGCTTGGTAGACATCTTCAATCTAGTCCCCTTTTCGAACCTATAAGAACTACCAAACAGGATAGAAGGACGAAGAAACGGAAGTTAAATGTGGCAACTCTATTCAAGAAAAGACGAAGGATTGCTAAGTCAGAGGATAAACAGAAGAGGAGTTCAGCTGCTAGTTTACCTCTATCAGAAGAAGCTCAGGAAGTTCTAATAGATTATCCAATGAGAGAGTTGACTGCCGAGGAAATTGAAAATTGGAAACcaagTTGGTACAAGGGAAAGCCAGTCGGTATAGAATCCACCCTTAAAACTCAAGACGGCTTAAAAACATCCTACATCGTACCAGATCCTCGTCTTCCAGAGGGATGGAacaaacatattttgaaaaagaaaggtTTTCCTGGAAAATGGGATACTGTCATTGTTAGTCCTGAGGATAAGAAATTCAGATCAAAAACAGAAATAGCGAAATATTTGGAAGAACATCCTATTGAAGGTGTCAATCAAAATTTGTTTGACTTTTCTTTGGTGTTACGAAGAAAACGGAAAGATCCTCATTTATCGGCTCCAGTAAGAGTAAGAGTAAAAGTAAAACCTGCACCAAAATCTCCAGAGAAAGATCCCAAAGAACCAATACCTGTGCCAGTACTAAAAGAACCCGAGCCAGAACCAACAGAAGAGCCTGTCAAAGAAGAAAGTAagactttattttattttcacaTCATTTTTCGGtaa
- Protein Sequence
- MGRKCNVKGCPSASNRSKDEGVTFHKIPPHMDVRPKWLSLCRIPEDKKNIKILYVCSRHFLRADFCNFKGKKYMLKHGVLPSVFPWDKSKLEAIKAVVKNEKVVKKDKTEAKEKPSTSIRPEQDILQDNRMEEDNSDINQENDMGEDKMMDESMTGISRPEKQLPSSIPATLNFAINSYVEALDFNNEWCLAKIMETDEEEKEVLIHFIDIPSKHDEWISMNSSRLRPAQNVDLNHSANPVVSLESDIDQTSIVNTIPIEASISTEAESSVLPTSSVISTIENVSILPSAPIASATVSTVSTVSTVSLSPTVSTVSPTVSTVSPTVSTVSPTVSTVSPTVTTVSPTVSTVSPTTSTVASETNVKKEVEVETYVVGERCLAAWSDCRKFPATVSKVLENDTYEVIFDDGFPKVLKAHRMAKALGRHLQSSPLFEPIRTTKQDRRTKKRKLNVATLFKKRRRIAKSEDKQKRSSAASLPLSEEAQEVLIDYPMRELTAEEIENWKPSWYKGKPVGIESTLKTQDGLKTSYIVPDPRLPEGWNKHILKKKGFPGKWDTVIVSPEDKKFRSKTEIAKYLEEHPIEGVNQNLFDFSLVLRRKRKDPHLSAPVRVRVKVKPAPKSPEKDPKEPIPVPVLKEPEPEPTEEPVKEESKTLFYFHIIFR*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00437036;
- 90% Identity
- iTF_00437036;
- 80% Identity
- iTF_00437036;