Dcan021491.1
Basic Information
- Insect
- Dexiosoma caninum
- Gene Symbol
- Aef1
- Assembly
- GCA_963924685.1
- Location
- OZ004729.1:1446903-1448274[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 4 3e+04 -4.0 0.1 25 36 17 28 14 30 0.76 2 5 0.0083 63 4.5 0.2 22 48 186 212 175 216 0.85 3 5 7.6e-07 0.0057 17.5 0.0 21 51 213 243 210 244 0.88 4 5 0.0079 59 4.6 0.1 21 51 241 271 239 272 0.87 5 5 0.00024 1.8 9.4 0.1 21 47 269 295 266 302 0.88
Sequence Information
- Coding Sequence
- atgcatataaaaaatatccaacatGCTCATGCTGCTGCTGCAGCTGCAGCAGCCATGCCACATTGTGACATTGTAATCGTATCATCATCGcctaataataacaataataatgaaagtaCAAATGGTGGATCGAGTAGTGGCAGCGCTGGCAATGGAGATACTGCTAATAACGGtcaccaacagcaacaacaacaacagcagcaacacgGTTCTTCGGCACCAACACCAACTGAGATTCCAATACCGTTTATGCATTTGGCTGGAGTAACAGCAGAAGCTCATGCGGCTGCTCAAGCGGCTGCTATGGCTGCTGCACAAGCAGCAGCTGCCCAAGCTGCTGCAGCTGAACAAGGTACTTCTAGTGCACCACCACCACCGGGCAGTACTCTTGCCCATCATCACGCCATATTACAGCAACATCCTTTGGCCCATTTGGTGGCAACGGCTGCTCACAGTCCTGCCCTATCTGAACAACATTTGATACCACGCGATGCTTCCGCATTGACTAATGGCCATAATGGCAACTCATCGTCAGCATCTGGTGGACCTGCCCCTGAAAAACCATTTCAATGTAACGTCTGTGAAAGGCGGTTTCGCCAATTAAGCACTCTAACGAATCATGTAAAAATTCATACTGGAGAAAAGCCGTTCAAATGTAATGTTTGTTATAAAACCTTTCGCCAATCGTCCACTCTAACTAATCATTTGAAAATACATACCGGCGAGAAGCCATTCAATTGTAGCTATTGTCCAAAACATTTTCGTCAATTGAGTACATTGACAAATCATTTGAAAATTCATACGGGTGAAAAACCTTTTGAATGTGCCGTGTGTAAAAAACAATTCCGTCAATCTAGTACTCTAAATAATCACATAAGAATCCATGTTATGGACAAAGTCTACGTGCCCGTAAAGATTAAAACAGAGGAGGAGGAAGGATGA
- Protein Sequence
- MHIKNIQHAHAAAAAAAAMPHCDIVIVSSSPNNNNNNESTNGGSSSGSAGNGDTANNGHQQQQQQQQQHGSSAPTPTEIPIPFMHLAGVTAEAHAAAQAAAMAAAQAAAAQAAAAEQGTSSAPPPPGSTLAHHHAILQQHPLAHLVATAAHSPALSEQHLIPRDASALTNGHNGNSSSASGGPAPEKPFQCNVCERRFRQLSTLTNHVKIHTGEKPFKCNVCYKTFRQSSTLTNHLKIHTGEKPFNCSYCPKHFRQLSTLTNHLKIHTGEKPFECAVCKKQFRQSSTLNNHIRIHVMDKVYVPVKIKTEEEEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00655752;
- 90% Identity
- iTF_00435934;
- 80% Identity
- iTF_00435934;