Dcan007158.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dexiosoma caninum
Gene Symbol
-
Assembly
GCA_963924685.1
Location
OZ004726.1:14479963-14481762[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.0057 0.46 11.8 0.8 2 20 252 270 251 274 0.88
2 10 0.86 69 4.9 3.8 6 23 284 301 284 301 0.98
3 10 1e-06 8.2e-05 23.6 3.5 1 23 307 330 307 330 0.97
4 10 3.8e-06 0.0003 21.8 1.9 1 23 339 361 339 361 0.98
5 10 0.025 2 9.7 0.6 1 23 367 390 367 390 0.83
6 10 0.002 0.16 13.2 0.4 3 23 396 416 395 416 0.96
7 10 0.074 6 8.3 3.1 2 23 425 447 424 448 0.93
8 10 0.0002 0.016 16.3 0.1 1 23 454 477 454 477 0.96
9 10 1.6e-05 0.0013 19.8 0.5 1 23 483 505 483 505 0.99
10 10 4.6e-05 0.0037 18.3 8.3 1 23 511 534 511 534 0.98

Sequence Information

Coding Sequence
aTGTCTCTGGATTCTGTGTGTCGGTTATGTGTTTGCCCTTTCCGTGATTGCCAGCAGTTATACGATGAAAGTGGGCAGTGCAATGATTCGTATGACATAGCCACCAAATACTTTGATCCAATGctATTAAATCCCGGACAAGAATGTAATTCTCCAGTTATATGTGTGGAGTGTTGGCAACACATCACTGATTTTTATAGCTTTCAACAGTTTGTTTATACGGCACAAGCAAAATTGGAAGACGTTAAGCAAATTGTAGCAGTTATCAAAATAGAAGATGAAATACTTTTAGAGGAAGCTCCTATTGCTGGTAGTGAAACTAAAAACAGTGTTTTATTGACTGATGAACTTAAAGATGAAGAGCACATGTCCGATGTAGACACGTTTGATGGCAAAGATGATAACCCATTCAGTTCAGATGATGATACACCTATTTTAGAAAGTATAAAAAAGATGAGCAAGAAGAAAGAAATTGTGAAGAGGAATCCTAAGAAAAGGACGCCCTTGATCGGAAAAACACCTTTGACTAAGAAAGAATTAAAACGCAGTAAAAGAGAGACCAAACGCAAACCAAAGGTGATCTTAACGGACGCCGAAGACAAGCCCGAATCAGGCGAAGAACCTAATGTGTCGGGTAATAACGAACAAAATGGAGGTCAAACAGAAAATAACTCTTCAAATGATAAAATGAGTTacaataaacaaagaactttaGAGAATGATGCGTTTATAGCTGCTTGGCGCAGTGAGTTGGAATGTGAATTATGTCATGCTTCATTTGCAAACTATACATTACTGCGTAAACATTTTGTACAAGAACATCCTGGGGAAAAGTTTTATGTATTATGCTGCCAACGGAAATTTACCCACCGTTTTCATATAGTCGAACACATTCGATTACACATGGATCCAAAtgcttttaaatgtaaaatatgtggaCGTTGCAGTACTAATAGTCGTAACTTAACTAAACACATTCGTGAGTTACATACAGAGGAAGGAAAACAACGTCCATTTGAGTGTACTGTTTGTCATAAATCCTTTATTAACAAAACTGTGTTAAGAATTCATATGGAGACACATGAAACCAATCTTACCCATATGTGCAAGGAATGTGGCAAAGGATTCCCCTCCGAACAGAGACGAAACGTACACGAGAAAGCAGTACACAATGCTGATCGAATTTGCGATCAATGCGGAAAAACATTACACGGCCCATATGCgcttaaaaaacacttattagAGCATGCTGGAGTTCAAAAACGAAAATGGCCTTGTGATCAATGTGGAGCTGAATTGCATTCACATTCTAGCTTGAAAAGACATAAACTAATTACTCATCATGACGGATCTACAGTTTATGTATGTAGCGATTGCGGCAAAGTTGCTACTACTGAAATGGCATTGCGCAGTcataagaaaaatgtacatcaAATAGAGCGTAAATTCAAATGTAcaatatgtgaaaaaagtttcaagttTGCAATAGTACTGCGCGAGCATATGGCAACACACACTGGAGAAGATCTCTATCAATGTCCTCATTGCACAAAAACATTTAAGACAAACGCAAACATGCATCATCATCGTAAAAAGGCACATCCTAAGGAATGGGCAGAAGCTCGCTTGAATAAACCACAAGGAATGAAAGTTGATTTTAGCTTGGTACAAAATGAAGtggttatataa
Protein Sequence
MSLDSVCRLCVCPFRDCQQLYDESGQCNDSYDIATKYFDPMLLNPGQECNSPVICVECWQHITDFYSFQQFVYTAQAKLEDVKQIVAVIKIEDEILLEEAPIAGSETKNSVLLTDELKDEEHMSDVDTFDGKDDNPFSSDDDTPILESIKKMSKKKEIVKRNPKKRTPLIGKTPLTKKELKRSKRETKRKPKVILTDAEDKPESGEEPNVSGNNEQNGGQTENNSSNDKMSYNKQRTLENDAFIAAWRSELECELCHASFANYTLLRKHFVQEHPGEKFYVLCCQRKFTHRFHIVEHIRLHMDPNAFKCKICGRCSTNSRNLTKHIRELHTEEGKQRPFECTVCHKSFINKTVLRIHMETHETNLTHMCKECGKGFPSEQRRNVHEKAVHNADRICDQCGKTLHGPYALKKHLLEHAGVQKRKWPCDQCGAELHSHSSLKRHKLITHHDGSTVYVCSDCGKVATTEMALRSHKKNVHQIERKFKCTICEKSFKFAIVLREHMATHTGEDLYQCPHCTKTFKTNANMHHHRKKAHPKEWAEARLNKPQGMKVDFSLVQNEVVI