Dcan022888.1
Basic Information
- Insect
- Dexiosoma caninum
- Gene Symbol
- -
- Assembly
- GCA_963924685.1
- Location
- OZ004729.1:37574509-37576950[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0015 0.12 13.6 5.8 2 23 233 254 232 254 0.97 2 12 0.012 0.96 10.8 2.3 1 23 260 285 260 285 0.93 3 12 0.022 1.8 9.9 0.3 3 23 294 317 292 317 0.93 4 12 0.00048 0.038 15.2 2.3 1 23 328 350 328 350 0.98 5 12 3.4e-06 0.00027 21.9 0.2 1 23 357 379 357 379 0.98 6 12 0.016 1.3 10.4 0.1 1 23 385 407 385 407 0.98 7 12 0.01 0.8 11.0 4.8 1 23 413 436 413 436 0.98 8 12 0.047 3.8 8.9 2.3 1 23 442 464 442 464 0.94 9 12 0.00027 0.021 15.9 2.7 2 23 471 492 470 492 0.96 10 12 1.2e-06 9.4e-05 23.4 0.4 1 23 596 619 596 619 0.97 11 12 0.0011 0.092 14.0 5.6 1 23 625 647 625 647 0.97 12 12 5.8e-05 0.0046 18.0 2.0 1 23 653 675 653 675 0.96
Sequence Information
- Coding Sequence
- ATGGATATTCATTCCATTTGTCGTATTTGTTTAGAATATTTACAAAATGGCAATTCATATGATCTGTTTTTGGTGCCCGGATTGGCCAAAAAATTGTGTATGTGCACGTCGCTGTCGGTGGAATCACAAGATGGGTTTCCAAAGAATATTTGTGCGGTGTGCTATACTCGCCTTAGTGATATGGCAGATTTTCAAAAGTTATGTGTTGATTCGGTGCAGAAATTCCAAGAGTTGCTGGCGAAGAATACAACTGTGTCCCCACCTACTTTCGATATTATGGAAGATACGGCTCCTATTGAAGGTGTACAGATGCCGgaagatgatgatgatcatttaaattttgatcCTTTGCTCACTAACCACAAGATGGAAATGTTAGAAAATGAGGAAGATGTTTTTAAAATGCTTGAGAATGTCGATAAAGAAGAAGTAGAGACGAAGGTGAAAGAAGATGCTGTAAGTGATGACTCCAGCGACAATGATAGATACAGCGACGAAGACTTTAATTTTCCTGACATGGGTGATAATGATGATAGTGATAGTGACGATGACAAGCCTTTAGCTTCTAGAATACGTAgtatcaaaaaagaaattaaggaGGAAAATGATAAATCTGAAACAGATGTAAAAGGTATGAAAATAAAACCGAAACGTAAAAGAATACCAGCTGCTGAGCGTCATTTGCATCGTATTATTGAATGTCATATTTGCCATCAGAaattcaaaaaaactaaaaactatgAAGAGCATATGAAGTACCACAATGACAAATTGCCATTCCAATGCGAGGTGGAAAACTGCAAGCGAGGGTTCACTACAGCCTATGGTTTGCGTTTGCATGTTGAACATTGCCATGACGAGACTGTGGAAAAAATTCCCTGCACTCAGGATGGTTGTGACATGAAATTTACTCGACGTCGAATACTTAATTGGCATTTGAAGAGGGTTCACAAACTCGCAAAAGAGGATGTTCCGAAATCGTATCCTTGCACTGAATGCGAAAAGGTATTTAAGTGTCCTATGGCTTTGAAAAAGCATATGTTTAAACATACTGGTCAGGAATTGCCATTCCCCTGCAATATTTGTGGCAAACGTTTTGTCATCAATAGCGCTCTAAAGGATCATTTAATGCGTCATGCCGGTATTAAGAATTATGTGTGTCCATATTGTGGTGTAGGTAAGACTACACGTCAGGAATGGAACACACACATTGCTACAcataatacagaaaaaaaattcaaatgccaCCTCTGTCCTCATGCTTCACATAATAAACAGAATCTACGTATGCATGTTCGAGTTGTGCACGAAAAAATCAAGGATTATGCTTGTCAATATTGTGGCAAGCAATTCGGAAAATCAAATGCGTGTAAAATGCATGAAATGACTCATACTGGTGAGAAGAGATGCGAGTGCAAAGTGTGTGGCAAACGGTTCTTGTATCCGAAAGGTCTTACAAAACATTTAAAGACGCATGAAAAACGTGTGCTGCGAGCTATTGAAGTTTATCGCAAACGTCAGGTGGAACTGGGAGAAGTGCCGGCGGAAGAAGCCGAACCAATGCCCGATTTGCCAAATCCTGAAAATACCCAAGAATCTCATCAAAAGGTAGCCGATGAAATTCTTAAGGTTTGTGCTGATTCTGTTAATTCTATACCTAAGGATCCAAGACGTGTTGAGCGGGTAGATATTGCAGATTTAGCTGGAACCGCCGTCAATCCTATTTCACAAGTGGCATTGCCTTCCTGGTCACCGCAGATAAATTTCATGATGAAAGAAGGAAAATACACTTGTCCCGATTGCGGTCAAGGATTCAATGGCTCTGGTAATCTGAGACGCCACCATAAGATAGTGCATCAGGGTGTGAAAGACTTTGCTTGTAGATACTGTCACAAGCGTTTTGCAAAGGCGCAAACATTGAAGCATCACGAAATGACGCACACAGGTGAGAAGCCGCATGCTTGTTCTCATTGTGATATGCGTTTCATACAAGTTGTCGCATTAAAACGCCATATGAAAGTTCACCAAGAACGGCCCACTTACATACCTCAAGCTGCCTTCAAAGCCAAAGAAGAATTGGTTAAGCAAGAGCGTAAGAAATATGCCATCAAACGGGAGCAAGAAAAAGATCGTGAAGCAATAGCTGAAGAAGCTCGTCGACAATTGGAAGAACTTAAACGAAAAGAAGACGAGCTACAACGTCGACAACGTGAGGCACTGACTAATGTACCGAAAGCCATACCAAAAGAACGCTTACCACCAGGTGCTGATATTTCAATAGCAACAAATGTATTACCAAGTGATTTAATTACTACTACCACCACTAATTCTACCGCCGAAGGCAATGTAGAAAGTGATAATTCGGACAGTGTTCTCAAAATAGAAAGTCAAGAAAACGAAGATGTGTGCTACCCTGATGttatgaataatttattaaagtaA
- Protein Sequence
- MDIHSICRICLEYLQNGNSYDLFLVPGLAKKLCMCTSLSVESQDGFPKNICAVCYTRLSDMADFQKLCVDSVQKFQELLAKNTTVSPPTFDIMEDTAPIEGVQMPEDDDDHLNFDPLLTNHKMEMLENEEDVFKMLENVDKEEVETKVKEDAVSDDSSDNDRYSDEDFNFPDMGDNDDSDSDDDKPLASRIRSIKKEIKEENDKSETDVKGMKIKPKRKRIPAAERHLHRIIECHICHQKFKKTKNYEEHMKYHNDKLPFQCEVENCKRGFTTAYGLRLHVEHCHDETVEKIPCTQDGCDMKFTRRRILNWHLKRVHKLAKEDVPKSYPCTECEKVFKCPMALKKHMFKHTGQELPFPCNICGKRFVINSALKDHLMRHAGIKNYVCPYCGVGKTTRQEWNTHIATHNTEKKFKCHLCPHASHNKQNLRMHVRVVHEKIKDYACQYCGKQFGKSNACKMHEMTHTGEKRCECKVCGKRFLYPKGLTKHLKTHEKRVLRAIEVYRKRQVELGEVPAEEAEPMPDLPNPENTQESHQKVADEILKVCADSVNSIPKDPRRVERVDIADLAGTAVNPISQVALPSWSPQINFMMKEGKYTCPDCGQGFNGSGNLRRHHKIVHQGVKDFACRYCHKRFAKAQTLKHHEMTHTGEKPHACSHCDMRFIQVVALKRHMKVHQERPTYIPQAAFKAKEELVKQERKKYAIKREQEKDREAIAEEARRQLEELKRKEDELQRRQREALTNVPKAIPKERLPPGADISIATNVLPSDLITTTTTNSTAEGNVESDNSDSVLKIESQENEDVCYPDVMNNLLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01019615;
- 90% Identity
- iTF_00742148;
- 80% Identity
- -