Dtru014816.1
Basic Information
- Insect
- Deroplatys truncata
- Gene Symbol
- -
- Assembly
- GCA_030765065.1
- Location
- CM060976.1:180477828-180499455[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1.9 1.3e+03 3.0 0.3 3 19 217 233 216 237 0.73 2 16 0.59 4e+02 4.6 4.5 1 19 243 261 243 265 0.92 3 16 0.011 7 10.1 0.4 2 19 281 298 280 300 0.91 4 16 0.016 11 9.6 2.2 1 23 307 329 307 329 0.92 5 16 2.8e-06 0.0019 21.4 0.6 2 23 336 358 335 358 0.95 6 16 5.5e-05 0.037 17.3 1.1 1 23 364 386 364 386 0.98 7 16 0.00036 0.24 14.7 0.1 1 23 392 414 392 414 0.97 8 16 2e-05 0.014 18.6 3.0 1 23 420 442 420 442 0.95 9 16 0.59 3.9e+02 4.6 0.4 1 23 453 478 453 478 0.94 10 16 4.1e-07 0.00027 24.0 0.7 1 23 497 519 497 519 0.98 11 16 7.1e-06 0.0048 20.1 3.6 1 23 525 547 525 547 0.98 12 16 5.4e-07 0.00036 23.6 1.2 1 23 553 575 553 575 0.98 13 16 0.022 15 9.1 0.2 1 23 581 603 581 603 0.97 14 16 0.00018 0.12 15.7 2.9 1 20 609 628 609 631 0.94 15 16 5.6e-08 3.7e-05 26.7 0.2 1 23 637 659 637 659 0.98 16 16 1.3e-05 0.0089 19.2 2.3 1 23 665 687 665 687 0.96
Sequence Information
- Coding Sequence
- ATGGGCATTAAGTGCACGATAGCCACCATAAGATCTCCAGCCATCGCCTTTGTTTGGCACCAGGTGAAAAGTACAGATCCATTACCCAAACAACTGTGTGTTCCATGCCTCAACAAATTAAACATGTTTCATGAATTCAGCGAGTTGTGTATCCAAGCGGAGAGTAGATTACGTGAAATGCATGAAAAAAAGTGTTTCAGggCAGCTGGAGCCAAAGAAAAGAAGCCAACAATTGAATTGCTGTCAATCAAAACAGAACAGGAAGGATGTGCACTGGATAATGGCTGTCAGACATGTGGCAATGAGAGTTTATTCTGCTGTCCTCTGTGTTGCAATGGTAACATGGCAATCCAGAATGCTGCACTGGATATCAGTGATGCTCTAGAGTTGGGCTTGCTAGGCCCCACTCAGTCGGGTTTGTATCAACGACCTGTTCTCAGTCCAGAAAAGCTAGAAGGACAAATAGTCAGGTTACAGACTAACCTGAATGATACCAGTACTGCTGTCTGGGAAGATATACCAGTTGTAAATGCAGAAGTGGCGACAATCACAGATGATGGTACTACCATGGAGGTTGCTGAAGGGATATATAACCTTCCAGTTGCAGATAATATGACCTTGCTTGATAATGGGTCTAACCTTCCAGCTTGTCGACTCTGTGGCCAGGTATTTCCAAATATTGAACTTTGTTTGGACCATGCTAAGGCACACATGGAGTCAGACTTGTATCCATGTAGTCTGTGTGAGCTGTGTTTTACTAGCGAGATATGCCTCATCAGCCACTGTGAAGAGCATAAGGCAGCAGAAGTACAAGTGCGACCAAAGGCTACAAAGCGATTGGTGTGTGCCACTTGTGGTAGGAGATTCAACAATCCAAAGACTCTTGCTGGACATTCTTGTTTTAGCATGGCACGACCTTACAAATGTTTGGACTGCGGCAAATTCTTTCAAACAGAAGCTAGGCTAATGTTCCATCAGAAGTTTCATTTAGGAGGGAACCCTGTAGAATGCGAGCACTGTGGAAAGGAGTTTACAAGAGAGAATAACTTGTTTGATCATGTTCGGTTggtgcatatgggtgagaaagcACATCGCTGTGATCAATGTGGAAAGACATTTCAGCTGAAGGCTCGTCTTGTGGCACATCTACGGGTTCATTCTGGGGAACGTCCATTTGTTTGCGATATATGTGGTGGAAAATTCTATGACAATGCTACATTAAAGGGCCACCGTGTAACACACCTGGATGTAAAACCTTTTCAGTGTGATAAATGTGGTCGTTGTTTTGCTCGTAAAACTTTATTCAAACAGCATGCACTTGCACATACTTCAGAGGAACCCAAAACACCAAAAGTTTATAGCTGCAAACTCTGCAATGATGGTGAGACATACACCTCATATGCCAGATTGCTAGATCACAGAAAACTAATCCATCCCACCGTCAAGCTATTTGATGAAGAGGATCAACCTGTTCATTCATCAAAACCATTCAAATGTGATGATTGTGGAAAATCATTTGCATATAGAGTGACATTGTTAGCACATCGACGAAACCATACTGGTGAGCTCCCTTTTGCATGTGATTATTGTGAAAAGCGATTCTCCCAAAAACGATCACTGGTGCTACACCACCGTACCCACACTGGAGAAAAGCCATTTGAATGCGATGTTTGTGGAAAACGGTTTGTGCAGAGTGCACATTTGTATTCGCACTTACGGCTGCATACAGGAGAAAAACCCTATGCCTGTGATATTTGTGGGGATAGATTCAGGCTAAAAGATGTTAGAGATGCACATATGCGAAAGCACACAGGCGaaagaccatttaaatgcaatgtgtgtagtaaggcatttCGTACTAGCCATTCCTATTACCAGCATATGTGGATACATCAGGGCAAGAAACCTTACCCATGTGGGTACTGTGGTAAGGCATTCCGTCGATCGAATGGACTTAAAATTCATATCCGCATACATACAGGTGAGAAGCCACACTCGTGCGATGTATGTGGACGTAGCTTTGCTCAGAAACAGGACATGAAAAAACATAGAAATCTACATGTGGTTGGCAAACTTTAA
- Protein Sequence
- MGIKCTIATIRSPAIAFVWHQVKSTDPLPKQLCVPCLNKLNMFHEFSELCIQAESRLREMHEKKCFRAAGAKEKKPTIELLSIKTEQEGCALDNGCQTCGNESLFCCPLCCNGNMAIQNAALDISDALELGLLGPTQSGLYQRPVLSPEKLEGQIVRLQTNLNDTSTAVWEDIPVVNAEVATITDDGTTMEVAEGIYNLPVADNMTLLDNGSNLPACRLCGQVFPNIELCLDHAKAHMESDLYPCSLCELCFTSEICLISHCEEHKAAEVQVRPKATKRLVCATCGRRFNNPKTLAGHSCFSMARPYKCLDCGKFFQTEARLMFHQKFHLGGNPVECEHCGKEFTRENNLFDHVRLVHMGEKAHRCDQCGKTFQLKARLVAHLRVHSGERPFVCDICGGKFYDNATLKGHRVTHLDVKPFQCDKCGRCFARKTLFKQHALAHTSEEPKTPKVYSCKLCNDGETYTSYARLLDHRKLIHPTVKLFDEEDQPVHSSKPFKCDDCGKSFAYRVTLLAHRRNHTGELPFACDYCEKRFSQKRSLVLHHRTHTGEKPFECDVCGKRFVQSAHLYSHLRLHTGEKPYACDICGDRFRLKDVRDAHMRKHTGERPFKCNVCSKAFRTSHSYYQHMWIHQGKKPYPCGYCGKAFRRSNGLKIHIRIHTGEKPHSCDVCGRSFAQKQDMKKHRNLHVVGKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00821178;
- 90% Identity
- iTF_00821178;
- 80% Identity
- -