Dtru069935.1
Basic Information
- Insect
- Deroplatys truncata
- Gene Symbol
- -
- Assembly
- GCA_030765065.1
- Location
- CM060984.1:255642875-255652697[-]
Transcription Factor Domain
- TF Family
- SRF
- Domain
- SRF domain
- PFAM
- PF00319
- TF Group
- Helix-turn-helix
- Description
- Serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [2], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation [1]. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic α-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel β-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see (IPR002487).
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.024 1.6e+03 1.4 0.0 15 23 148 156 137 156 0.85 2 12 0.028 1.9e+03 1.2 0.0 15 23 187 195 181 195 0.88 3 12 0.028 1.9e+03 1.2 0.0 15 23 226 234 220 234 0.88 4 12 0.024 1.6e+03 1.4 0.0 15 23 265 273 254 273 0.85 5 12 0.028 1.9e+03 1.2 0.0 15 23 304 312 298 312 0.88 6 12 0.028 1.9e+03 1.2 0.0 15 23 343 351 337 351 0.88 7 12 0.024 1.6e+03 1.4 0.0 15 23 382 390 371 390 0.85 8 12 0.028 1.9e+03 1.2 0.0 15 23 421 429 415 429 0.88 9 12 0.028 1.9e+03 1.2 0.0 15 23 460 468 454 468 0.88 10 12 0.015 1e+03 2.1 0.0 11 23 495 507 488 507 0.76 11 12 0.02 1.4e+03 1.7 0.0 15 23 538 546 529 546 0.82 12 12 0.028 1.9e+03 1.2 0.0 15 23 577 585 571 585 0.88
Sequence Information
- Coding Sequence
- ATGGACCCCGTCTCACTTGCCCCCATCGTCAGCCGGATCTGGTTGTCCTTCGGTTCTTATCTCCTCCTCGAAGGGGCCGCGgGGTTGCGGCTGTGCGTGCTGTGGGAGTTTAACCCTGATGTCGTTAAGGGACTACTCGGCTGGAACCCACCTGGGCGATTTCAGCTCCTTCAGGGATCCCCGGAGGATCGGAGCCCAGTAGAGTCGCCTCGGGCGGcgttggaaacgttaaggacatcgtCTGTGCTTCCGCCCGtcttcatccggatctggttgccttgGGTCTCTCCCGGGGTTCACGGTAGAAGGCAAAGGGCCGGATGGCCTTGTGCGTGGTGCTCTGCCCAGGTTTTCAGGGGCGGACTCCcatCTGGACAGAGACAAGGTAACAGAGGACGCTTGCACCTCGACTCAAGGCGGATCTATATctctaccacccccaggaggaacggattaaTGAAGGAGGCGATAGGCCGTAGTCAGACCGGCCGACAGAGACAAGGTAACAGAGGACGCTTGCACCTCGGCTCAAGGCGGATCTATGTctctaccatccccaggaggaacggattaaTGAAGGAGGCGATAGGCCGTAGTCAGACCGGCCGACAGAGACAAGGTAACAGAGGACACTTGCACCTCGGCTCAAGGCGGATCTATGTctctaccatccccaggaggaacggattaaTGAAGGAGGCGATAGGCCGTAGTCAGACCGGCCGACAGAGACAAGGTAACAgaggacacttgcacctcgactcaagGCGGATCTATATctctaccacccccaggaggaacggattaaTGAAGGAGGCGATAGGCCGTAGTCAGACCGGCCGACAGAGACAAGGTAACAGAGGACGCTTGCACCTCGGCTCAAGGCGGATCTATGTctctaccatccccaggaggaacggattaaTGAAGGAGGCGATAGGCCGTAGTCAGACCGGCCGACAGAGACAAGGTAACAGAGGACACTTGCACCTCGGCTCAAGGCGGATCTATGTctctaccatccccaggaggaacggattaaTGAAGGAGGCGATAGGCCGTAGTCAGACCGGCCGACAGAGACAAGGGAACAGAGGACGCTTGCACCTCGACTCAAGGCGGATCTATATctctaccacccccaggaggaacggattaaTGAAGGAGGCGATAGGCCGTAGTCAGACCGGCCGACAGAGACAAGGTAACAGAGGACACTTGCACCTCGGCTCAAGGCGGATCTATGTctctaccatccccaggaggaacggattaaTGAAGGAGGCGATAGGCCATAGTCAGACCGGCCGACAGAGACAAGGTAACAGAGGACGCTTGCACCTCGGCTCAAGGCGGATCTATGTctctaccatccccaggaggaacggattaaTGAAGGAGGCGATAGGCCATAGTCAGACCGGCCGACAGAGACAAGGTAACAGAGGACGCTTGCACCTCGACTCAAGGCAGATCTATGTctctaccacccccaggaggaacggattaaTGAAGGAGGCGATAGGCCGTAGTCAGACCGGCCGACAGAGACAAGGTAACAGAGGACACTTGCACCTCGGCTCAAGGCGGATCTATGTctctaccacccccaggaggaacggattaaTGAAGGAGGCGATAGGCCGTAGTCAGACCGGCCGACAGAGACAAGGTAACAGAGGACACTTGCACCTCGGCTCAAGGCGGATCTATGTctctaccatccccaggaggaacggattaaTGAAGGAGGCGATAGGCCATAGTCAGACCGGCCGACAGAGACAAGagttccctatTGATTCTAAGCTGGATGACACCGACGAGCTGCAcacagaaggcttccctctggccgAACCAGAGGGAACTCCACCTCCCGAGGCCGCTCAGATAAGGCTGGTATCTGACAGGGCCGAGAAAAATTTTCCAATCAGCaagtatctgcgccatctgtccgacaccgaatGCGAGGCCCGCACgttgccgcggagccatctctccCGGTTTCAAACTGTCTAA
- Protein Sequence
- MDPVSLAPIVSRIWLSFGSYLLLEGAAGLRLCVLWEFNPDVVKGLLGWNPPGRFQLLQGSPEDRSPVESPRAALETLRTSSVLPPVFIRIWLPWVSPGVHGRRQRAGWPCAWCSAQVFRGGLPSGQRQGNRGRLHLDSRRIYISTTPRRNGLMKEAIGRSQTGRQRQGNRGRLHLGSRRIYVSTIPRRNGLMKEAIGRSQTGRQRQGNRGHLHLGSRRIYVSTIPRRNGLMKEAIGRSQTGRQRQGNRGHLHLDSRRIYISTTPRRNGLMKEAIGRSQTGRQRQGNRGRLHLGSRRIYVSTIPRRNGLMKEAIGRSQTGRQRQGNRGHLHLGSRRIYVSTIPRRNGLMKEAIGRSQTGRQRQGNRGRLHLDSRRIYISTTPRRNGLMKEAIGRSQTGRQRQGNRGHLHLGSRRIYVSTIPRRNGLMKEAIGHSQTGRQRQGNRGRLHLGSRRIYVSTIPRRNGLMKEAIGHSQTGRQRQGNRGRLHLDSRQIYVSTTPRRNGLMKEAIGRSQTGRQRQGNRGHLHLGSRRIYVSTTPRRNGLMKEAIGRSQTGRQRQGNRGHLHLGSRRIYVSTIPRRNGLMKEAIGHSQTGRQRQEFPIDSKLDDTDELHTEGFPLAEPEGTPPPEAAQIRLVSDRAEKNFPISKYLRHLSDTECEARTLPRSHLSRFQTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -