Dalb020753.1
Basic Information
- Insect
- Dermolepida albohirtum
- Gene Symbol
- -
- Assembly
- GCA_031893035.1
- Location
- JAVIWB010003723.1:621896-634172[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 4.7 8.5e+02 1.8 0.1 3 12 6 15 5 20 0.85 2 17 1.1 2e+02 3.8 0.0 2 23 299 321 298 321 0.89 3 17 0.0024 0.44 12.2 0.1 1 23 376 399 376 399 0.97 4 17 2.5 4.5e+02 2.7 1.2 2 21 406 425 405 426 0.92 5 17 1.6 2.8e+02 3.3 1.0 1 23 494 518 494 518 0.90 6 17 0.00036 0.065 14.8 4.6 1 23 521 544 521 544 0.96 7 17 0.012 2.2 10.0 3.8 2 23 551 573 550 573 0.94 8 17 0.0082 1.5 10.5 4.0 1 21 678 698 678 699 0.95 9 17 0.00058 0.11 14.1 1.5 2 23 711 733 710 733 0.94 10 17 0.0035 0.63 11.7 1.4 1 23 736 759 736 759 0.95 11 17 1.1 2.1e+02 3.8 1.9 3 23 762 785 761 785 0.91 12 17 2.3 4.2e+02 2.8 0.2 1 23 789 812 789 812 0.93 13 17 0.32 58 5.5 0.4 2 23 819 841 818 841 0.94 14 17 0.044 8.1 8.2 1.0 2 23 850 872 849 872 0.95 15 17 0.038 6.9 8.4 0.2 3 23 879 900 877 900 0.92 16 17 6.7 1.2e+03 1.3 2.1 3 23 1056 1077 1055 1077 0.94 17 17 0.54 98 4.8 0.1 2 23 1084 1106 1083 1106 0.93
Sequence Information
- Coding Sequence
- ATGGAAACAAAATTGTGTAGAATATGTGGGAAGTCAACTGATAATCACCTAAACATATTCAAAACAGaaggtttgaaaataaaattggaaaccTGTCTTCCAATAATTATTTCTCAACATTGTCTCTTACCTGAAACAATATGCAAAGAATGTGTTGAGAATGTAGAAAACTTCtatgatttcattaaaaattgcctgcaaaatttaattattttggaatCGCAGTATGACATCCATGAATCTTGTTTAAAAAGTAAACGAAAGTTTGAAAAAGGAACGATTGTTGATACAGTTGCAAAGACTGAAAAAAGTATCCAAACTGATGAGATtagctttttaaaatcttacaaAGAGTCGATAGATTTTCCAAAGACATTGGAGGAAGCAGaaaaaactttaaatgataGTGATTATTTAAGGTTTCTGCCAAAGTccttaattaaagaaataagtttGGTTAACTATGATATATCGGATGAATCAAATTCGGAAAATGAAGATTCAACTATTAATAGCGCAATAGCACTTTCCAATAATAAACAAGATAAGAGTTCAGAATctttaaatttcaacaattttctcaTAAACAAACAGTATTTTGACAATCAAgagaataaattagtaaatgaaATTACCCAAAGAATAAATCAGAAAAGAAAATGTGATGAAATATTGCCTTATCAAACCAAAATATGCAAGTTTGACATCAATAGTCGAAGAAAAAATAGACAGCCtaaaaaaatcagtaataagaATATAGAAGATGtacctatttttaataaatggaatCAAGAAGTtgcaaatatagaaaataatggaaTAACAGGTGATAGAGTATTACATAGTGAACAAGTAATTAATGAACATACAAATGCCATCCAAAGTTTACCACAAGTCTGTTTATTATGCGAATCTCAATTTCCAAGTCCAGCTTTATTGGCAGCACATGTGTATGAAACACATGGGATTGATATGGCTCAAATTATTTCATCAGAGCctattttggaaaagaaaagaaaaatacctaaCTTAGTGAAAATAGCTGATCTGAAACATAAGAATGAAAGCCCAGatCCTGTACCAGTAATTGATATACCTGAAGAACCTCCAACATTACAACCCAGTTACGCTTGCCCTATTTGTCCAGCTCTTCTTACTAACAAAACAGATTTGTATACGCATCTTCGTGTTAAGCATCCGAAACAAGCCTCTCTAACTTGCGGTTTATGTGCTCAAATGTGTACATCATGTGTTTCCCTGTCGTCGCACCTAGAATCATGCTCCAAACAACATTTAACGACCTCTCTGGCCAAGTATATATGCAAATTATGTCGCTATAGCGACGACAATTCAAAGATAGTAGAAAATCATATCATTGTACATGACTTTGTTCCGCAGTATTGCAAAAAACAGTCTAAAATCTTTGATCCTTGTGATTACATCGAACTCAATGCGAATTCTGAAAGTTTGCCGAAGATTTATACGTGTACGGAATGTTCCCAAGGTATTTTCGACAACTTTAAGGAATTCAGTGCTCATCGCAGATCTCAGCATCAAATCTTTCATTGTGATCTCTGCAACAAATTTTACGGTAGAAACTCTCATTTGTGGAAGCATGTTAATAGACTGCATAAAGGACATCCGAGCATAACGTGTCAGTTATGTCATAAAACCAGTGCTTCAAAATATCATTTAGCACAACACTTCAGTAAAATACACAGTGCCAAGTTGTTCCATTCAAAACCAGATCCGACAAATGAGTTTGAAGACTTTATGAAGCAAAAGTTCCAAGGTTTTGATTTCCAATCAGTGAAACAAAGCTTCATGAGACAGGAGCTGTTAAAGCAAGAACAGAAAGACTCATTTAGTGAAGAAGTTTCTGATCAAGAAGAAGAGAACGACAAAATTGACGACGAAGAAAAGGACGTAAAGaaagacaagcaaCAAGATTTACCAAAGGAAATTGATTCTTCTTCAAATCTATATACCAACATTATAACGAATTACACTCCACCACAGAACAATGGCGAATTCAAGTGTCCCAAGTGTTTAAAAGGCTTCCATAAGAAAAATCTTCTAAAGAAGCACAAAAAGAATTGTAGACCTCGTCTACAAAAGGATTTACTAACGCGTTGTAAAACTTGCTCAAGAATATTTAAGGATAGACAGAGCTTAGCGAAACATCTCATCAATTACCATTCGGAATACGCATGTGAAATTTGCGGGCAAAAATTTCAGAGCAAGTGTGAAATTGTCTCTCATATCCGTTTTACGCATCCAAACTGTCACTTGTTTTGTTTCTGCGGAAACATCCTAAGGGACAGGGACGATCTCGTAGTTCATCAACAAGATCACCGAAATTCCTTCATATGCCAATTCTGTGCCGACAGTCTGCCAACAAAGATCAAACTTAAAATGCATATATTAAGTTTGCATAGGAAAATTTTGAGCTTAAGTTGTGGTAtatgtttgaaattatttgaaactcAACATATATTAAGGGATCATGTTCGCCTCGTACACAAGGAACACTTGTTACCACTTACGTCTTGTACAGTTTGCGGAAAAAATTACGGCTCAAAATGGAAAACGTTCGATCATCTAAACAAATCTCACGGTCGAATATTCAAACCTTGTAAAGCCTGCCTGGAAGTATTCGATTCCGAAGAGCAGCTTCAAAAACATTACGAAAATATGCACACGAAATTTTCTCAATCAAAAATATCATCTAATCAAAACGCACCATCCATCGATTCcgtgaatattaaaaaagaattgtgtGAAAGCGATTTCGAGCACAACTACGAAAACGAATACATTAAACATAGCAATAGTGATGTGGAAGATGCTGAACATTATCCTGTATACCAGAATGTGAGTCAGAGTGACGGCGAGGATAGAAATGTAACTGCAAAAACGGAGTTCACAAACATTGCTGATGAGAATAAAATATCGCTTTTAGAAAAGAGACTTTTGGGTAAGAAAATATCGGATGACCAGAAgaaatctacaaaaaaaattaaaaatgacaagAAGAGTATCAAAACAGACATCGCTAATTTATCATCAAGCAAAAGAGATTTAGATGAGAGCGATTGCAACCAAAGTCCATTACAAAACAGCTCCAAAAGGACTGTTTATGTTAACAGTAACGATCCTTCGCTCTGTGAGATTTGTTTGAAAACCTGGCCTGCTAAGAAACATTTGTGGCAACACTACATACGATGCCACAAAACTGTTGCGGCGACCGTCTGTGGAATTTGTTTGAAAGCAAATGAAAGTTACGAGGCTTTACAGAAACATCTGAGAGAAAATCATCCTACGTTACTGCATGGGCAAGGTTTTGGATCGAATTTCATTTGTAGGATATGTGGAAGGTAA
- Protein Sequence
- METKLCRICGKSTDNHLNIFKTEGLKIKLETCLPIIISQHCLLPETICKECVENVENFYDFIKNCLQNLIILESQYDIHESCLKSKRKFEKGTIVDTVAKTEKSIQTDEISFLKSYKESIDFPKTLEEAEKTLNDSDYLRFLPKSLIKEISLVNYDISDESNSENEDSTINSAIALSNNKQDKSSESLNFNNFLINKQYFDNQENKLVNEITQRINQKRKCDEILPYQTKICKFDINSRRKNRQPKKISNKNIEDVPIFNKWNQEVANIENNGITGDRVLHSEQVINEHTNAIQSLPQVCLLCESQFPSPALLAAHVYETHGIDMAQIISSEPILEKKRKIPNLVKIADLKHKNESPDPVPVIDIPEEPPTLQPSYACPICPALLTNKTDLYTHLRVKHPKQASLTCGLCAQMCTSCVSLSSHLESCSKQHLTTSLAKYICKLCRYSDDNSKIVENHIIVHDFVPQYCKKQSKIFDPCDYIELNANSESLPKIYTCTECSQGIFDNFKEFSAHRRSQHQIFHCDLCNKFYGRNSHLWKHVNRLHKGHPSITCQLCHKTSASKYHLAQHFSKIHSAKLFHSKPDPTNEFEDFMKQKFQGFDFQSVKQSFMRQELLKQEQKDSFSEEVSDQEEENDKIDDEEKDVKKDKQQDLPKEIDSSSNLYTNIITNYTPPQNNGEFKCPKCLKGFHKKNLLKKHKKNCRPRLQKDLLTRCKTCSRIFKDRQSLAKHLINYHSEYACEICGQKFQSKCEIVSHIRFTHPNCHLFCFCGNILRDRDDLVVHQQDHRNSFICQFCADSLPTKIKLKMHILSLHRKILSLSCGICLKLFETQHILRDHVRLVHKEHLLPLTSCTVCGKNYGSKWKTFDHLNKSHGRIFKPCKACLEVFDSEEQLQKHYENMHTKFSQSKISSNQNAPSIDSVNIKKELCESDFEHNYENEYIKHSNSDVEDAEHYPVYQNVSQSDGEDRNVTAKTEFTNIADENKISLLEKRLLGKKISDDQKKSTKKIKNDKKSIKTDIANLSSSKRDLDESDCNQSPLQNSSKRTVYVNSNDPSLCEICLKTWPAKKHLWQHYIRCHKTVAATVCGICLKANESYEALQKHLRENHPTLLHGQGFGSNFICRICGR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00071030;
- 90% Identity
- -
- 80% Identity
- -