Basic Information

Gene Symbol
Baz2b
Assembly
GCA_031893035.1
Location
JAVIWB010002361.1:4169-68512[-]

Transcription Factor Domain

TF Family
MBD
Domain
MBD domain
PFAM
PF01429
TF Group
Unclassified Structure
Description
The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2.5e-16 1.6e-12 47.9 0.0 4 74 583 654 581 657 0.91

Sequence Information

Coding Sequence
ATGGCGTCGCATTTGGCTGCTCAGGATTACCTGGCAAGGCTTCAAGCTTCAGGGTTAAATTTTCCTGGATTAGGTAATCCTACTGACCCTTATTCAACATTAGGTTTGACAGCTCTGGCTAGTGGACATCATAAAAGTTCCAAAAGTTCCAAGAATTCCTCCTCTTCCTCGTCGTCATCGTCATCACTGCCAAAACAACAATCGCTAGGAAACACTAATCTTTCCTCAAAAGATAAATCGGTTCATAATGCACAATCAATTAATAGCAGCAAGCCCTCAGAAAGTCGCCATGACTTAAACATCAAAACAAGTTCTCCTATGCCAAATAATAAAGGTTCTGCTTCCACAAATCCTAAATACTCAAATGTTAGTGGTTTAACAATACAACCTAGTGTTAGTAATACAAAATTGCCTCCAACTAGTACTCCCAATACCACGAATACTAGCAGCAACGACCAAAGGAAAACTATACCGAAGAGCAATAATAGCAATGATATTGCATTTATGAAAAGTGCACTAGAGAAACCCAGGAGTACTCCGCCGTCAACAAGTATTTTTACAAATCCCCTTAGTATGGCCAGTAATGTCGATAAAAATCCTGCGGTCAGTAATACTTCAACAACTCCTCAAAGTACTAGTAATTCAACGGTGCCGAGTTTGCCATCCAGTATTTTAAGCGCTGCACTGGAAGGAAATGGTGATCCGAATTCCATACTTGGTGGTGTAAGATTACCGCCAGacacagaaattattaaatatacttcttCGATAGTCGGTCCGAAAATACCCGGGACAACGAATCGTGGCAGGAAAAAAACTATATCTTTAGATCCACCTTCTGTCAGTTTGCATCCCACCTTATCCAGCACGGGAATGCTTATAGAAAGAACGACAAAGCGACCTAAACTGGATCAAGCCGAAATGCATTCGCCTTCGTCTCCAAATGATCGAGTTGAAGTGATAAAATTACCTGCTACAAACGGAAGTCCTTCAGGTATTTCTATGTCTACATTTGGCAGCAGTAATAGCACAAATAATGGCAGCAATAGTGAACTATCAGCCGACGGACCTCTTAATTTATCATTAAAAGCATCCACTACAAATTCTTCAAATCATAcaagttcatctttaaattCTCTTAGCAATATGTCAGCAAATATTGGTATTGACagaatatCTCGAAGAAAACCAGGACCGAAACCTCGCAAAGTTATACAACCATCATCTCTACCTCCCGGTGCACCAAGTGCTTCTTTAGTTCAATTGTTTTCAACTGCAGATTCTCCAAGACCACCTAGTCGAAATGAACTAATGGAATCGTCAAGTAACAGTACGTCAGCTCTATCGACGATATCAGCTTCCATCACCGCGCAAAATCACAAAGATGGTAGGCCAAGAAATCTCGGCAGAGGTGTTAGCAAACCGAAAAAGAATACCGTTGCGTCACTTTTAGCACAAAGTAGGGCTTTGGGTATTAAACCAATGCCAATTCTGGATCCTAATGTGCCGATGACTCAACAGATGTCGTTGCTCAAATCTAATATCCTTGCGGCCCAACAGTACATAGCGGAATCAGGTGGtgatgaaaaaacattaaataaatttttgcaggAAAAATTCAGGGGTACCTTAAGTGATTCAAGCACAGTTGATGCTTCAACAGATTCTGATAACCTTACAGATTCTAATCATACCGACTCTGAAATTGAAATGGAAAGTGTTACGAAAAAACAGAAACAGTACGACGAAAGAGCTCTGAGACAACCACTAGAAAAAGgtTGGAAAAGAGAAACCATCATTAGAGGTGTATCGAAAAGTGGAGCAATTAAAGGAGATGTTACTTACATCGCACCTGATTCtagcaataaatttaaacaaatgtcTGATATTTCTcagtacttagattatcaaaaaaatattgatcttACTAAAGAGAACTTCACATTTAGTAGTAGGGTAATATTAGGTGATTATATACAACCAATGCCTCCAGAGTTCGGGTCAGAACATGAAGTCGTTAAACTAACAGAAGATGAAGTTCTGAGAAGATTGGACGAAATAAAATCCGCAATGAGAACAAGTTTACCGGTTGAACAAAGAATAGAAGTTGCACGACGGCAGCAGGCTGCTAGAGCAGCAGCTCGACTGGATAGAGAACAAGCAAGGATAGCAAGAGAAATTGAAAAGTGTGAAAGACAAGAGGCAGCACGACGTGATAGGGAAGCTAAATCTCAACAAATATTAGAAGCTAAGAGAAAGCGGCAGGAagaattagaaaaacaaaaacaagaagaaCAACATCGAAAACAACAGGAGAGAGAGCTGAAAAGACAACAAAATGCAATTCTTAAAGAACAGATGTACATACAGGAGATCAGTAAACAGCGAGAAATGCTCTACACTGTCGAATTGGAGAGAGAAAGAAGAAGACAGCATATGGCCCTTGTAAAGGCTTTAGAAAACCGTCGTAAACTGGAAGAGCGTGAACGAAAAAAGCAACAAATGCTAGCTGAAAAGCAagcaaataaagagaaaaaattagaacaaagacgaatagaaatagaaatattgacTGAATTAAGAAAACCTTGTGAAGATTTAGAACTCGCTCAACAGTCTCTTCCTGAATATGAAAGAATTTCAGGACTTAAACTGCCTGGAAAGGCCTTCTCTGATATACTTATGGTCTTCGAATTTCTACACAACTTTGGAGAAACCTTAGGTTTTGACATGGAAAGTTTACCAACATTGGATTCGTTACAACAAGCTCTATTATATAACGAAACAACTTCTGAAGCTGAGGAAGAATTATTATCTGTCATGACACATCTCATTGTTTGTGCAATTGAAGATCCTGGAATACCAAATCCCGCTCGTCATACCACCATTCTCGGACAAAGCTTGAGACAAGCTGACATCACCCATGCTAATATCTCTGAAATTCTTAGAATTTATATGTATGCTAACGCAACCGGGGAAGTAAAAGCTCTTACAGgTGTACACTTTGAAAGAGATAGAGAAAAAAGGATAGCAGATCATCATCAGAACGAATGTGAGATGCAACAAACACAATCTGGCAAAAATGCAACTTATTACGAATTACTTCACGAAAATCCAACATGGAAAATGTCAGATTTACTTAAGGATAAACCATTTTTGGCTCTATCCCCGTCAGATAAAGCAGCAATTTTGGCGTTTATCTGTAATGAACTCCTTCAAAACAAGGCTGTTATAAGACAAATCGAAGGTTCTCTTGAAACAGTAGCTCACTGCAAAAAGGAAAAATGGTTACTAGATGCTAAAGTTAGAAAATTACGAATGTTACATAGTCGAAAAGTAAGATCGGAGGCAGCAGAAAAAGCACATGCAAAATTAGATGGGGAAAGTGTTGAAAACACTATCGACTCACCAGCAATACATAAAGACGATCTTTTGGATGATGAGGAAAATGAAATGAGTGAAAATGAAAGTGTTGGTACACAACCTGAAGAGGAAGAAGATAACAAACTATCTGGAGAAGAATtaggaaaaaaattagaaaagattgTTAAAGCGTCAGAAATTCAATTGCAAAGTCTAAATGCTTCCGCCCATCAATTGCGCGCTACGTGTTTTGGACAAGATAGATATTGGCGTAGATATTGGTCTTTACCCAAAGCAGGAGGTATTTTTGTTGAAGCCATGGAGTCCGCCCAACCAGAAATTCTCGAGGAACAAGATCAAGCAGTATTTGAATCAGACACAAGTGTAAAGAGTCtagaagaaattaagaaaattattcatgATGTTGAAGGTGTAAATGATCAATCCGCAGACAAGGAAGTGAGAACAATAGttgaaaataagaaatgtattgaagagaacgaaataaagaaagaattgtTAATAGATACAAATGACAACGAGcatagaaaaacaacaaacagGTTAGATATTATTGAAAACGGTGATATAATGGATAATAGAGAACGTAACTTGGATGAATTAAGGAAAAGTGTTGACAGAATAGTACAAAGTTTAGAAAAagctgaaaataaatatgaatctcATAATACCGcggttaatttaaataatcacaTTGACATACATAATGTAAAAATTGAGCCAGATTCAGAACAAAtttcaaatagaaaatttaaccTTTTTGAAAAACTAGGTGAATGTATGgagagagaaaataaaactgaagaAGATCTCAAAGCGGAAGTCAAAGCAGAGgtaaaagaagaattaaaaaacgaaatacttaatgaacttaaaaatgatATCAAGActgaaataaaaagtgaaaatgACGAAGATAGAGGTGAATCTGATAGAAAATGGTTCAGTATATTATCTAAGGATGGATTGTCGTGTAAAGGAGTGCATTTAACAGCCGGCAATCGTTGGGATAATGGTGTGGGCGCTTGTACAAGAGATAATTTAACAGAATTAAAAATACCAGTATTCCCTCCACCAAATAATTCctcaaattatatttcaagCCATTGTGATAGTCCAGCACCATTGCAAATGACAGCAGAAGAAAGTGCTCAACTtgagtatataaaaaaacatggaCTTCCAAAATCTTGTGAACGAAAAGTAGTCCCTCTTGATAAAAGATATGGATGGTGGAGAATATCAAGCACTGAGCAATTAAGAGAAATTTTAGATAATCTGCATGTAAGAGGTGCTAGAGAAAGAGAATTAAAACGAAGCTTCGTTAGTATAATGCAAACTATGTATGAAGATCAAGGAAGGCTTCATATAGAGGAAGGGCAAAAGGATGCCACGGACCTCAGCATTAATGATAATGATGAGGTAGATATGATAGAAGGTGTAGGAGTTCCTGCTGAATATATATCTTCAACATGGAGCCCAATGGTGGCACAAAGGGTTGACATGTTTCTTCTGGAGCaggTAGAAGCTCTTGAAGACAAAGTGGCCAATGCTAGTATGCAAGTAAAAGGTTGGAGAATCCCAACTAGAGATTTATCCGATATTCCACTTGGCCATGTTGTTGGACTGGCTAAGGAAAGATTAGCATCTCTGGAAGCGGCAATAGAAAGACGGTATCTAAAGCCACCTTTGGGAGCGAGCAGCGGAGATCCCAATTTGGCCGCAATCGCCCAAGAAGCAGCTGGAGTAACGACTCCCGTGCAACCTAGTacaaattttgatgaaattcccAAAGGTCTGGCGATATGGCGGGAAGCAGTCAATCGATCACAAACTTCAGCACAGCTGGCCATGTGTCTGTATTCTTTGGAGGCGTCCATCGCATGGGACAAGAGTATTATGAAAGCTGTGAGCCCCTCTCATGTCTTTAATAAACAGAGAGCTCGCAAATATAACAGCAAGCTGAGTaaCTGCCAATTTTGCAACAGTGGGGACAACGAAGATAAGCTTTTGTTATGTGACAGTTGTGATAAAGGCTATCACACTTACTGTTTCAAACCAAAAATGGAGAATATACCAGATGGTGATTGGTATTGTCATGAGTGTATGAATAAAGCGACAGGAGAACGTAATTGCATTGTATGCGGCAAGAAACAATCAACTACTGGTACAAAATTAATACTATGTGAAGTTTGTCCGCGCGCATACCATACTGATTGCATTCGACCAACTCTGAATAAGGTACCTAGAGGCAAATGGTATTGTTCCAACTGTATTTCAAAGAAGCCACAAAAGAAGACTATACGTAAGAATAACAATAAACAGGCACGTGATAGTGAATCATCTGATCATCATCCACCaagCCCCGCTCCATCGCATAGTTCAGTAACAACGAATGAGGATACGCCAATCACAGCATGCAATCAAAGCGATATCTCCAACTCCAGCATAACAAATACTGGATCACCGTCTTCACAGGCTGCAAAAAAAGATAAggtatcaaaaaaattaataaaagaactgGCTCCATGTAAAGCAATCTTGGAAGATTTAGAATGTCATGACGACGCGTGGCCCTTTCTACTGCCCGTAAATACGAAACAGTTTCCTACTTACAAAAAGATAATCAAGTGTCCCATGGATTTATCTACAATCAAGAAACGCCTTCAAGATATGTAG
Protein Sequence
MASHLAAQDYLARLQASGLNFPGLGNPTDPYSTLGLTALASGHHKSSKSSKNSSSSSSSSSSLPKQQSLGNTNLSSKDKSVHNAQSINSSKPSESRHDLNIKTSSPMPNNKGSASTNPKYSNVSGLTIQPSVSNTKLPPTSTPNTTNTSSNDQRKTIPKSNNSNDIAFMKSALEKPRSTPPSTSIFTNPLSMASNVDKNPAVSNTSTTPQSTSNSTVPSLPSSILSAALEGNGDPNSILGGVRLPPDTEIIKYTSSIVGPKIPGTTNRGRKKTISLDPPSVSLHPTLSSTGMLIERTTKRPKLDQAEMHSPSSPNDRVEVIKLPATNGSPSGISMSTFGSSNSTNNGSNSELSADGPLNLSLKASTTNSSNHTSSSLNSLSNMSANIGIDRISRRKPGPKPRKVIQPSSLPPGAPSASLVQLFSTADSPRPPSRNELMESSSNSTSALSTISASITAQNHKDGRPRNLGRGVSKPKKNTVASLLAQSRALGIKPMPILDPNVPMTQQMSLLKSNILAAQQYIAESGGDEKTLNKFLQEKFRGTLSDSSTVDASTDSDNLTDSNHTDSEIEMESVTKKQKQYDERALRQPLEKGWKRETIIRGVSKSGAIKGDVTYIAPDSSNKFKQMSDISQYLDYQKNIDLTKENFTFSSRVILGDYIQPMPPEFGSEHEVVKLTEDEVLRRLDEIKSAMRTSLPVEQRIEVARRQQAARAAARLDREQARIAREIEKCERQEAARRDREAKSQQILEAKRKRQEELEKQKQEEQHRKQQERELKRQQNAILKEQMYIQEISKQREMLYTVELERERRRQHMALVKALENRRKLEERERKKQQMLAEKQANKEKKLEQRRIEIEILTELRKPCEDLELAQQSLPEYERISGLKLPGKAFSDILMVFEFLHNFGETLGFDMESLPTLDSLQQALLYNETTSEAEEELLSVMTHLIVCAIEDPGIPNPARHTTILGQSLRQADITHANISEILRIYMYANATGEVKALTGVHFERDREKRIADHHQNECEMQQTQSGKNATYYELLHENPTWKMSDLLKDKPFLALSPSDKAAILAFICNELLQNKAVIRQIEGSLETVAHCKKEKWLLDAKVRKLRMLHSRKVRSEAAEKAHAKLDGESVENTIDSPAIHKDDLLDDEENEMSENESVGTQPEEEEDNKLSGEELGKKLEKIVKASEIQLQSLNASAHQLRATCFGQDRYWRRYWSLPKAGGIFVEAMESAQPEILEEQDQAVFESDTSVKSLEEIKKIIHDVEGVNDQSADKEVRTIVENKKCIEENEIKKELLIDTNDNEHRKTTNRLDIIENGDIMDNRERNLDELRKSVDRIVQSLEKAENKYESHNTAVNLNNHIDIHNVKIEPDSEQISNRKFNLFEKLGECMERENKTEEDLKAEVKAEVKEELKNEILNELKNDIKTEIKSENDEDRGESDRKWFSILSKDGLSCKGVHLTAGNRWDNGVGACTRDNLTELKIPVFPPPNNSSNYISSHCDSPAPLQMTAEESAQLEYIKKHGLPKSCERKVVPLDKRYGWWRISSTEQLREILDNLHVRGARERELKRSFVSIMQTMYEDQGRLHIEEGQKDATDLSINDNDEVDMIEGVGVPAEYISSTWSPMVAQRVDMFLLEQVEALEDKVANASMQVKGWRIPTRDLSDIPLGHVVGLAKERLASLEAAIERRYLKPPLGASSGDPNLAAIAQEAAGVTTPVQPSTNFDEIPKGLAIWREAVNRSQTSAQLAMCLYSLEASIAWDKSIMKAVSPSHVFNKQRARKYNSKLSNCQFCNSGDNEDKLLLCDSCDKGYHTYCFKPKMENIPDGDWYCHECMNKATGERNCIVCGKKQSTTGTKLILCEVCPRAYHTDCIRPTLNKVPRGKWYCSNCISKKPQKKTIRKNNNKQARDSESSDHHPPSPAPSHSSVTTNEDTPITACNQSDISNSSITNTGSPSSQAAKKDKVSKKLIKELAPCKAILEDLECHDDAWPFLLPVNTKQFPTYKKIIKCPMDLSTIKKRLQDM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00956311;
90% Identity
-
80% Identity
-