Dalb028607.1
Basic Information
- Insect
- Dermolepida albohirtum
- Gene Symbol
- -
- Assembly
- GCA_031893035.1
- Location
- JAVIWB010005334.1:633217-634227[+]
Transcription Factor Domain
- TF Family
- PAX
- Domain
- PAX domain
- PFAM
- PF00292
- TF Group
- Helix-turn-helix
- Description
- The paired domain, a ~126 amino acid DNA-binding domain, is found in eukaryotic transcription regulatory proteins involved in embryogenesis. Initially identified in Drosophila’s paired (prd) protein, it typically resides in the N-terminal region and may be followed by an octapeptide, a homeodomain, or a Pro-Ser-Thr-rich C terminus. Paired domain proteins act as transcription repressors or activators, with DNA-binding specificity mediated by three subdomains. Crystal structures reveal a bipartite DNA-binding paired domain: an N-terminal subdomain (PAI) and a C-terminal subdomain (RED), linked by a flexible linker. Both subdomains contain a helix-turn-helix motif that binds DNA's major groove, while the linker may bind the minor groove. Variations in domain usage across Pax proteins and isoforms determine sequence specificity.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.3e-09 3.7e-06 28.0 0.8 19 100 7 87 2 107 0.92
Sequence Information
- Coding Sequence
- ATGTCACGGAAAGTGTATTCAGACGatataaaggtaaaaataattgagcAGTATAAAAAAGGTGTTTCACAAGCAAGTATCTCCGAAAGTTTCGACATAGACAAATCGGTAGTGTCCCGAATGATACAGAGATATGAAGCTAGAGGTACGGTGGCTACAAAATTTCGCTCTGGACGACCGCGAAAAACCACTTACAGAGAGGATCACCGAATTCGTCGCCTATGCAAGAAAAATCCATGGCTAAGTGCTcaggaaataaaatgtactgtaaATTGTAATGTCAGCGCACGTACTATACGCAGACGTTTAGTAGACGGCGGATTATACAGTAGAAGACCAGCGAAAAAACCTTTGTTAACACAAAAACAGAGAGCAGCGAGACTACGTTTTGCGAAGGAACACGCATCTTGGTctgtagaaaaatggaaaactgtcttatttagcgacgaatccaaatttaatatctctcGCAGCGATGGAATTTGCTATATAAGGCGTCCTAAAGGAGAAagattaaatccaaaatattacacGAAAACCGTAAAGCACGGAGGTGGCAATGTCATtgtttgggggtgtttttctgGTAATGGTGTAGGTCCACTACATcgcatagatggtattatggatagatttgtatacaaaaatatattggaaaatactatgttgCCATTTGCCGAATGGAATATGCCACTTAAATGGTAttttcagcacgataacgacCCTAAGCACACGGCTAGGATCGTTAAGGAGTGGCTAAGTAGGCAAAGAATTAATGTTCTTTCTTGGCCAAGTCAATCGCCGGATCTGAATCCGATAGAGAACTTGTGGGAGATTGTGGATAGAAGATTAAGGCttaataaaacgtattgtaaCGCAGATGAACTCTATAAGGCGTTATCAATCGAGTGGCAACAAATTGATCCACAAATACTTACCAATTTGATCGAATCAATGCCTCGACGGTGCGcagctattattgaaaataaaggttatgcgacgaaatattaa
- Protein Sequence
- MSRKVYSDDIKVKIIEQYKKGVSQASISESFDIDKSVVSRMIQRYEARGTVATKFRSGRPRKTTYREDHRIRRLCKKNPWLSAQEIKCTVNCNVSARTIRRRLVDGGLYSRRPAKKPLLTQKQRAARLRFAKEHASWSVEKWKTVLFSDESKFNISRSDGICYIRRPKGERLNPKYYTKTVKHGGGNVIVWGCFSGNGVGPLHRIDGIMDRFVYKNILENTMLPFAEWNMPLKWYFQHDNDPKHTARIVKEWLSRQRINVLSWPSQSPDLNPIENLWEIVDRRLRLNKTYCNADELYKALSIEWQQIDPQILTNLIESMPRRCAAIIENKGYATKY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00434050; iTF_00434051; iTF_00434052; iTF_00434053; iTF_00434022; iTF_00434054; iTF_00434023; iTF_00434024; iTF_00434056; iTF_00434025; iTF_00434057; iTF_00434026; iTF_00434059; iTF_00434028; iTF_00434060; iTF_00434029; iTF_00434061; iTF_00434030; iTF_00434062; iTF_00434031; iTF_00434063; iTF_00434032; iTF_00434064; iTF_00434033; iTF_00434065; iTF_00434034; iTF_00434066; iTF_00434035; iTF_00434036; iTF_00434037; iTF_00434038; iTF_00434039; iTF_00434040; iTF_00434041; iTF_00434042; iTF_00434043; iTF_00434044; iTF_00434045; iTF_00434046; iTF_00434047; iTF_00434048; iTF_00434019; iTF_00434055; iTF_00434058; iTF_00434027;
- 90% Identity
- iTF_00434050; iTF_00434051; iTF_00434052; iTF_00434053; iTF_00434022; iTF_00434054; iTF_00434023; iTF_00434024; iTF_00434056; iTF_00434025; iTF_00434057; iTF_00434026; iTF_00434059; iTF_00434028; iTF_00434060; iTF_00434029; iTF_00434030; iTF_00434062; iTF_00434031; iTF_00434063; iTF_00434032; iTF_00434064; iTF_00434033; iTF_00434065; iTF_00434034; iTF_00434066; iTF_00434035; iTF_00434036; iTF_00434037; iTF_00434038; iTF_00434039; iTF_00434040; iTF_00434041; iTF_00434042; iTF_00434043; iTF_00434044; iTF_00434045; iTF_00434046; iTF_00434047; iTF_00434048; iTF_00434019; iTF_00434055; iTF_00434058; iTF_00434027; iTF_00434061;