Dalb010200.1
Basic Information
- Insect
- Dermolepida albohirtum
- Gene Symbol
- foxn3
- Assembly
- GCA_031893035.1
- Location
- JAVIWB010001921.1:265168-268870[-]
Transcription Factor Domain
- TF Family
- Fork_head
- Domain
- Fork_head domain
- PFAM
- PF00250
- TF Group
- Helix-turn-helix
- Description
- The fork head domain is a conserved DNA-binding domain (also known as a winged helix) of about 100 amino-acid residues. Drosophila melanogaster fork head protein is a transcription factor that promotes terminal rather than segmental development, contains neither homeodomains nor zinc-fingers characteristic of other transcription factors [1]. Instead, it contains a distinct type of DNA-binding region, containing around 100 amino acids, which has since been identified in a number of transcription factors (including D. melanogaster FD1-5, mammalian HNF-3, human HTLF, Saccharomyces cerevisiae HCM1, etc.). This is referred to as the fork head domain but is also known as a 'winged helix' [1, 2, 3]. The fork head domain binds B-DNA as a monomer [2], but shows no similarity to previously identified DNA-binding motifs. Although the domain is found in several different transcription factors, a common function is their involvement in early developmental decisions of cell fates during embryogenesis [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.5e-37 4.8e-34 117.4 0.1 1 86 82 165 82 167 0.96 2 2 7.2 1.4e+04 -2.7 0.0 70 80 250 260 244 266 0.67
Sequence Information
- Coding Sequence
- ATGAATTTGGTAAATCCATCTCCTTCAAACAGCGTGAATTCCACTCCAATAAAGTACATGAATAACAATCATATACTATCGGATCACTCGCCTACCAGTGACTACATCGACGATTCTTCTGTATCGACTGCTGAATCTTCATCGAACAGCTCATTAAATTCCCCAATACCACCATCCAACCCATCTGCACACCGCAACAAACATCCACACAATATACCTTACGATCCACTTGTTCACGTAAACAGTAAACCACCTTactcattttcttgtttaatattcATGGCGATCGAGGATTCTAAGCAGAAGGCGTTGCCCGTAAAGGAAATCTACGCCTGGATTCTGGATCATTTTCCCTACTTCAGAAGCGCACCAACTGGTTGGAAAAATAGCGTTAGGCATAATCTTtcgttaaataaatgtttccaaaaagtcgaaaaagcaccaaatctCGGCAAGGGATCACTATGGACCGTCGATCAACAGTATAAACCGAATCTGTTACAAGCACTCACAAGATCTCCTTTTCATCCCTGTTCGACACTTGATCCTAGCGTTTATTTCAACAAGACTAGACCTAATCAAGAGAAACATGTAAATACCAGACTTCCCAACCCCGAACTATTTCCCTATTTATCCAAAGAGatgaaaaatttagttaaatctGAAGTATCTGATGATTCTCTGGATGCAGTGGATGCTGCTGCGGTAATGTTAAGTTTGAGGCACGGGTCAACTAGTAGGACTAGGCCGAAGAAAAATGGAAACATGTGGCAGGTCATCACGACGTCTCCCAGCCAAGATCATACATACAGTGCTGCagataataattttgttgacGAGGCGTTTGAAAGTGACGAAGAAAGGGTTCCTAAAAGTAGTACCTGTAGAAAAATCGATTTCGAAGACGAAGAGGAACGAAAAATTAAGGAAGGTGCCGAAACATTGCTCAATTTAGCTGGAATAGCCACGAGAAAGCGTTACAACTCGCAGAGTCGCGACGAAGAATCCAGTAACAACAAATACCCAAAATTGTCGGAATCTTACGAAAGACCGATCACACATTTCAGGCCCCGACTGCTCCGGAAGAAAAAGGACCtgaaaaaattatcattaaataataacaataacacagATGATGCGTGGGTGAAACATCGGAGAGAGTTAGAAATCAATCAAGGgaggtaa
- Protein Sequence
- MNLVNPSPSNSVNSTPIKYMNNNHILSDHSPTSDYIDDSSVSTAESSSNSSLNSPIPPSNPSAHRNKHPHNIPYDPLVHVNSKPPYSFSCLIFMAIEDSKQKALPVKEIYAWILDHFPYFRSAPTGWKNSVRHNLSLNKCFQKVEKAPNLGKGSLWTVDQQYKPNLLQALTRSPFHPCSTLDPSVYFNKTRPNQEKHVNTRLPNPELFPYLSKEMKNLVKSEVSDDSLDAVDAAAVMLSLRHGSTSRTRPKKNGNMWQVITTSPSQDHTYSAADNNFVDEAFESDEERVPKSSTCRKIDFEDEEERKIKEGAETLLNLAGIATRKRYNSQSRDEESSNNKYPKLSESYERPITHFRPRLLRKKKDLKKLSLNNNNNTDDAWVKHRRELEINQGR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00064993; iTF_00987610; iTF_00626881; iTF_01498692; iTF_01120690; iTF_00956122; iTF_00625950; iTF_01123503; iTF_00307386; iTF_01252541;
- 90% Identity
- iTF_00064993; iTF_00987610;
- 80% Identity
- -