Dpun020373.1
Basic Information
- Insect
- Dendrolimus punctatus
- Gene Symbol
- -
- Assembly
- GCA_012273795.1
- Location
- CM022553.1:12223800-12230599[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00013 0.0084 16.9 0.7 1 23 272 295 272 295 0.97 2 17 2.3e-05 0.0015 19.2 1.7 1 23 300 322 300 322 0.99 3 17 4.5 2.9e+02 2.6 0.2 3 23 327 347 326 347 0.90 4 17 0.021 1.4 9.9 0.5 1 23 354 377 354 377 0.93 5 17 0.0021 0.14 13.1 0.1 2 23 441 463 440 463 0.95 6 17 6.7e-05 0.0044 17.8 0.6 1 23 469 492 469 492 0.94 7 17 0.27 18 6.4 0.3 3 19 498 514 497 516 0.91 8 17 0.076 4.9 8.2 0.6 1 23 553 576 553 576 0.93 9 17 0.25 16 6.5 0.1 3 23 590 610 588 610 0.94 10 17 0.009 0.59 11.1 1.8 1 23 616 638 616 638 0.98 11 17 0.00031 0.02 15.7 4.3 1 23 673 695 673 695 0.97 12 17 0.039 2.5 9.1 0.1 2 23 700 721 700 721 0.94 13 17 0.0025 0.16 12.8 0.1 2 23 739 761 738 761 0.95 14 17 7.4e-05 0.0048 17.6 2.0 1 23 767 789 767 789 0.98 15 17 0.00066 0.043 14.6 5.7 2 23 796 817 795 817 0.96 16 17 0.0029 0.19 12.6 0.7 1 23 823 846 823 846 0.92 17 17 0.22 15 6.7 1.8 3 23 853 874 852 874 0.96
Sequence Information
- Coding Sequence
- ATGGATGATCCAGGATCAAAAACAGACCTCAAAAATGTTGAATGGCTGAAAACCAAGTTAAGCAGAGTCTGGAACTCTACTAAAGTATGCGGCATGTGCCTCGAAGAGCGAGACAACTTGTGCCCTCTTAACATGGAATTTGTAATTAGCAAGCAAAAGTCATCTAAGTCATTTGttgatttgttaaattatgttttCAATGAGGATATTGAAAATTTAGTGACTGGTACCGGAGTATGCGAAAATTGTACAGAAAAAGCCCTGCAAGcttacatctttataaataatactagacaAATTGCTCGCGTTATAAATGATTGTGTTAATGATATTTACTCAAAAGTGGTCGATCTGTCTGAACAGTTAGATGACACAATTGACTGTGAAAATGCTAATATAATGATTGTTCTAGAATCAGAACCTCAATTATACGATATTATAGATGATCTAACTAATATGGAAATAATGCCTACAAATTcacctaaaataataaagaaagaagaTAATGTCAATTCAGAAGAAAAGAAAGACATGATTTCTACAAACTCAGATAATTTAGAAACAACAGATGATTTAACAACAAATACTGTACAAGAAAGTGATACAGTAACAAATGTAACCAAAGCAAATGATATAATAACTAGTATTGCTAACactaataatagtataaaaaattattatagtagaaACATACAAACCTTAACGAAGCAACCAAAAATCAATGTTCAACCAGAAATATACCTTAAAGGTGGCAATATAGTAATCAATCCTATAAACACAAATAATTCACCATCAAGTCTCATCATTAATACCTATAAATGTTCTGAATGTCCTGAAATTTTCACATCATACAGAGCATTGAAGGAACACGAAAAAtctaaacacaaagaaaaaattTACCAATGCAGTAtctgtaacaaaatatataacacattacaatatcttaatatacattataagaCACATTTGAAGTCTATATGCAAGATATGCCGTTTAGTGTTACCAGAGACAAAACTGATGGAGCATCTACGTACAGAACATGCAACGGCAATACAAATACATCCTTGCAAATTTTGCGACCTAGTCTATTATTCTGAAGAAGCTTTAGAAACTCATTTCAAAGCTATTCACTTGAGAAATTGCACTGAGACGGAAGAAAGTAAAAATCAGTGCCCAATGTGTTTAAGAAATATACGGCATAGTGAAGATAAAAGGCACAAGTGCAAGTTTCAGTGTTCGGAGTGTTTTGTTAATCCGTGTATACATTATCGATATCTTACCAAATATCGGGAAGAAATTTTACGTCACTCGAATACTATTTCGTGTGTTGATTGTGATTACGTTACTAAAAGGAAAGAATATCTGATCATTCACGCAAACCGTGAACATTTAAACCATCATCCCTTCATTTGCAATGATTGCGGTACACAATTCTATACTAAGATGAGTTTACGCATACATATTGAGCAATATCACAGCACGTTAAATATTTGCGAGTATTGCGATTTGGAATTTAAGAAAAGTACGAAAATTAAGGAACATAAGGAAGCTTGCAAGAAGTTGGCTCGACCTCATCCTTGCAAACGATGTGTTGCAACATTTGATTGCGAAGAAGAATTAACTAATCATGAAAATCTAAGACATAATGATGTCGGATTTTCGTGTCATATGTGCCAGAGAAGGTTTTTGAATATGATTGAATTGGAAGAACATATAGTTTCAATACACAGACAGATACAGTGCAAGAAACGTAGGAAAAACATAGACTGTACATTATGCGATATAAAGTTTAACAGTGTTAAAGAGATGCTAGAACACGAAAGTATCCACAGCCCAGATGATAAGTATCCATGCAAAGTGTgtttaaaagaattttattcACTGAAAAAGCTATATATTCACAAACAAAGGCATTATGAGAGAATACAGTGTGGTGGATGTAAGAAACGAGTCATCACATCATTCTATCCACAACACGAAGTGCGTTGTCCGTATAAGCGAAATGCAACATTGACTCATATGTGTGAAACGTGCGGGAAATCTTTTCATTTGGAATCACTACTACGTTTACATCAAAAAACCCATTCAAAGTCCGAGGAATGTGCTGAATGTGGCAAGATGCTTAAACCGTCCGGTCTTTTAAGGCATTTGGAGAAAGTCCACAACATTAAAGATCCAAATCCAAAAAAGCGGTACTCACAGAAAGGACGGTTATCTTGCAACGACTGCGGGTATTCAGCGAAAAGAAAGTGGGTTTTAGAAGCACACGTGAATAGATACCATTTAAAAGTGAAACcgtttgtttgtaatatatgCAAAAAAGAATTTTGCGGGAAAAGTAGATTGAGCGAACACATGGCAACACATTCAAATTCGAACACATGTTATTGTTCTGTGTGTGGCAAGAAATTTGCTAACAAGGTTTGCTTGAAGTTGCATTTTCGAATGCATACAGGCGAAACGCCATACGCATGTGATATTTGTGGTGAGAAATTCCGCACCTCAAGTATAATGAAGACCCATAgagtaaaaaaacatttacacaAAACAGTCGCTTGTCCGATGTGCGACAGTATGTTTTACATGGCCAGAGACATGAGACACCATTTTAAGAAAACACACTGGAAACACAAAGACAAGCCATTTGACGTAAAGGAAGTGTTGCCAGAAGAATATTACCATTTATTTGAAGACGGACGAATGGCAAAAATTACAGATGAGGTCATTGAAACTGAAGTGGTCAAGTCGGAAATGGATCTTTATATAGAAACTGAACAATGA
- Protein Sequence
- MDDPGSKTDLKNVEWLKTKLSRVWNSTKVCGMCLEERDNLCPLNMEFVISKQKSSKSFVDLLNYVFNEDIENLVTGTGVCENCTEKALQAYIFINNTRQIARVINDCVNDIYSKVVDLSEQLDDTIDCENANIMIVLESEPQLYDIIDDLTNMEIMPTNSPKIIKKEDNVNSEEKKDMISTNSDNLETTDDLTTNTVQESDTVTNVTKANDIITSIANTNNSIKNYYSRNIQTLTKQPKINVQPEIYLKGGNIVINPINTNNSPSSLIINTYKCSECPEIFTSYRALKEHEKSKHKEKIYQCSICNKIYNTLQYLNIHYKTHLKSICKICRLVLPETKLMEHLRTEHATAIQIHPCKFCDLVYYSEEALETHFKAIHLRNCTETEESKNQCPMCLRNIRHSEDKRHKCKFQCSECFVNPCIHYRYLTKYREEILRHSNTISCVDCDYVTKRKEYLIIHANREHLNHHPFICNDCGTQFYTKMSLRIHIEQYHSTLNICEYCDLEFKKSTKIKEHKEACKKLARPHPCKRCVATFDCEEELTNHENLRHNDVGFSCHMCQRRFLNMIELEEHIVSIHRQIQCKKRRKNIDCTLCDIKFNSVKEMLEHESIHSPDDKYPCKVCLKEFYSLKKLYIHKQRHYERIQCGGCKKRVITSFYPQHEVRCPYKRNATLTHMCETCGKSFHLESLLRLHQKTHSKSEECAECGKMLKPSGLLRHLEKVHNIKDPNPKKRYSQKGRLSCNDCGYSAKRKWVLEAHVNRYHLKVKPFVCNICKKEFCGKSRLSEHMATHSNSNTCYCSVCGKKFANKVCLKLHFRMHTGETPYACDICGEKFRTSSIMKTHRVKKHLHKTVACPMCDSMFYMARDMRHHFKKTHWKHKDKPFDVKEVLPEEYYHLFEDGRMAKITDEVIETEVVKSEMDLYIETEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00432544;
- 90% Identity
- iTF_00432544;
- 80% Identity
- -