Dpun014416.1
Basic Information
- Insect
- Dendrolimus punctatus
- Gene Symbol
- -
- Assembly
- GCA_012273795.1
- Location
- CM022539.1:18609917-18617701[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.052 3.4 8.7 4.1 1 23 14 36 14 36 0.95 2 16 0.00018 0.012 16.4 0.1 1 23 60 82 60 82 0.92 3 16 0.0053 0.35 11.8 0.1 1 23 106 128 106 128 0.94 4 16 5.3e-05 0.0035 18.1 1.1 1 23 223 245 223 245 0.96 5 16 0.00031 0.02 15.7 1.1 1 23 251 273 251 273 0.98 6 16 4.1e-05 0.0027 18.4 3.2 1 23 279 301 279 301 0.96 7 16 7.5e-06 0.00049 20.8 0.5 2 23 308 329 307 329 0.97 8 16 0.00024 0.016 16.0 0.1 1 23 335 357 335 357 0.97 9 16 6.9e-07 4.5e-05 24.0 0.3 1 23 363 385 363 385 0.99 10 16 0.0001 0.0067 17.2 1.5 1 23 391 414 391 414 0.97 11 16 0.00025 0.016 16.0 4.3 1 23 420 443 420 443 0.97 12 16 0.0011 0.074 13.9 2.5 1 23 449 472 449 472 0.95 13 16 0.019 1.3 10.0 1.2 1 23 478 501 478 501 0.96 14 16 0.0082 0.54 11.2 6.4 1 23 544 567 544 567 0.91 15 16 0.001 0.066 14.1 1.5 1 23 575 598 575 598 0.97 16 16 0.0055 0.36 11.7 2.3 1 20 602 621 602 623 0.94
Sequence Information
- Coding Sequence
- ATGCAACTTATAGTAATGGAAATTTCTAAGCTAGAAGTCCATTCCTGCCACAAGTGTTTCGCGATATTCACAACCCAGAAGGAACTTGGTGAACATTTGTATTATCATGAAATATTGCCAACAGAATTACTTGATCATTTTTTAAGTGTAACAGTTTCATTGGAACgtataaatgaatacatatgTAATGACTGCAGTAAAGTCTTTCCTACAGAAAGAGAACTGCGTCTCCATGAGGTGTTGCATATGAAAGATATGGTtATGAGCAATAGATGCAAGAAACTAGATGAAGCTTATGAAAAGGCTGAGAAACCATATAAATGTGAGGTATGCGGAATTCGCTATGTGGCCGAGAGTACATTGAAAATGCACTCTGTGATCCATGAACCATTCCCGCATGTGTGCCATTGCGGTATTGGATATTACATCACAGCAGATTTTAATAATCACCGAAAGCTCGTACACTCTGAAGCACCTCTTCCTGTTGAACAAATATCAATAGAAGACAATGTGATACCTACCCCAACaaagaataaaagaaacaaGACCGTAAAGAATGGGCAAGTTTGCAAACCAGATAATCAAGCGGgaaagagaaaaataaaaaaggaactgAAAGTTGAAACACAAAAAAgggaaaataaatatgtaaagatAGGTAAACAGTTTTTCTGttctatttgtaataaaatgttttcgtccaagaagaatattatatacCATCAAGCGGTGCACACGGGTGAAAAACCATTTGAATGCAAGGTATGTTATAAAACATATGCTCATGGTGCTGGTCTCCGGGCCCATTTGAAAAAACATAGTGAAGTAAAGAATTATGCATGTACGTACTGCGACAAGAAATTTTTTGATAGGTACGGCTTAAAACGACATACTTTTAGCCATACAAGAGAGAAAGTACTACAATGTGAGGTCTGTCATAAGGATTTCAGTGACCCGTCTGGGTATTTGAGACATGTTCGTATTCACACTCGGGAAACAACATACCAGTGTAACATATGTCCAGAAAAGTTCAACGTACCAATTGCTTTAGCGAAACATAAACTGCAACATGAAGGCATAAAGAACTTCACATGCAACATATGCGATAAAGCCTTTTACGAAGCAGCAGCTTTAAGGAAGCATTTACGCAGGCATACGGATGAGAAGAAATTCCAATGCCATGATTGCTTGAAAAAATTTCCAGCAAAGAACAACTTGATACAGCATATTACAAGAGTTCATATACAAATGAAAAAATTTGTATGCAACAGATGTGGTAATAAGTTTTGCACTAAAGCTGAACTTTGTAGGCACGTATCTACGGTTCATGAGAAACTTAGGAACTTTGAGTGTACATCGTGTGGTAAATGGTTTTCCACAAAACAGCATTtagaaaatcattttaataatgtCCACAAACCGAATTATCATTTTGATTGCGATTATTGTTTGATAAAGTACAAAGCGAAGAGATCACTGAgcaaacatattataaaaagacaTATGAATATTCAATGTGAGGTGTGTATGGAATATTTCAGTTGTAATAGTATATTGATGGAACATAAAAAGTCACTCTGCAAAGGACCAGTTACAAGAAAgtcgaaaaaaaatatgaaagtaaaGACGTATGAATGTTACGAGTGTTTTAGAAAGTTTTCCGTTAAATCTCAATTGAAAAAGCATTGCAATCGGTTTCATGGAAGTAGTCAGCAAGAATTTTACATATGTAATGAATGTGGATCAGAGTTCAAATTAAGGCATATGCTGGTATATCATATACGTAAGAGCCATATGAAAATTTATGCTTGCGAGTATTGCCGTTGCATGTTTTATAGTCAGAGTTCTTTTGCGAAACATCGAACAGTTTGTGTGAAACCTGAACCTAGCCAgtgtgaataa
- Protein Sequence
- MQLIVMEISKLEVHSCHKCFAIFTTQKELGEHLYYHEILPTELLDHFLSVTVSLERINEYICNDCSKVFPTERELRLHEVLHMKDMVMSNRCKKLDEAYEKAEKPYKCEVCGIRYVAESTLKMHSVIHEPFPHVCHCGIGYYITADFNNHRKLVHSEAPLPVEQISIEDNVIPTPTKNKRNKTVKNGQVCKPDNQAGKRKIKKELKVETQKRENKYVKIGKQFFCSICNKMFSSKKNIIYHQAVHTGEKPFECKVCYKTYAHGAGLRAHLKKHSEVKNYACTYCDKKFFDRYGLKRHTFSHTREKVLQCEVCHKDFSDPSGYLRHVRIHTRETTYQCNICPEKFNVPIALAKHKLQHEGIKNFTCNICDKAFYEAAALRKHLRRHTDEKKFQCHDCLKKFPAKNNLIQHITRVHIQMKKFVCNRCGNKFCTKAELCRHVSTVHEKLRNFECTSCGKWFSTKQHLENHFNNVHKPNYHFDCDYCLIKYKAKRSLSKHIIKRHMNIQCEVCMEYFSCNSILMEHKKSLCKGPVTRKSKKNMKVKTYECYECFRKFSVKSQLKKHCNRFHGSSQQEFYICNECGSEFKLRHMLVYHIRKSHMKIYACEYCRCMFYSQSSFAKHRTVCVKPEPSQCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00432464;
- 90% Identity
- iTF_00432464;
- 80% Identity
- -