Basic Information

Insect: Dendrolimus pini
Gene Symbol: -
Assembly: GCA_949752895.1
Location: OX457136.1:18969273-18973619[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.044 4.2 8.9 4.4 1 23 9 31 9 31 0.95

2 16 9.8e-05 0.0092 17.3 0.2 1 23 55 77 55 77 0.95

3 16 0.003 0.28 12.6 0.3 1 23 101 123 101 123 0.94

4 16 5.5e-05 0.0052 18.1 1.1 1 23 218 240 218 240 0.96

5 16 0.00018 0.017 16.5 1.1 1 23 246 268 246 268 0.98

6 16 4.3e-05 0.004 18.4 3.2 1 23 274 296 274 296 0.96

7 16 7.7e-06 0.00073 20.8 0.5 2 23 303 324 302 324 0.97

8 16 0.00025 0.024 16.0 0.1 1 23 330 352 330 352 0.97

9 16 7.1e-07 6.7e-05 24.0 0.3 1 23 358 380 358 380 0.99

10 16 8.7e-05 0.0082 17.5 0.5 1 23 386 409 386 409 0.97

11 16 0.00026 0.025 16.0 4.3 1 23 415 438 415 438 0.97

12 16 0.0012 0.11 13.9 2.5 1 23 444 467 444 467 0.95

13 16 0.046 4.3 8.9 1.2 1 23 473 496 473 496 0.94

14 16 0.00016 0.015 16.6 3.4 1 23 539 562 539 562 0.96

15 16 0.00061 0.058 14.8 1.6 1 23 570 593 570 593 0.97

16 16 0.0045 0.42 12.1 1.4 1 19 597 615 597 618 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.044	4.2	8.9	4.4	1	23	9	31	9	31	0.95
2	16	9.8e-05	0.0092	17.3	0.2	1	23	55	77	55	77	0.95
3	16	0.003	0.28	12.6	0.3	1	23	101	123	101	123	0.94
4	16	5.5e-05	0.0052	18.1	1.1	1	23	218	240	218	240	0.96
5	16	0.00018	0.017	16.5	1.1	1	23	246	268	246	268	0.98
6	16	4.3e-05	0.004	18.4	3.2	1	23	274	296	274	296	0.96
7	16	7.7e-06	0.00073	20.8	0.5	2	23	303	324	302	324	0.97
8	16	0.00025	0.024	16.0	0.1	1	23	330	352	330	352	0.97
9	16	7.1e-07	6.7e-05	24.0	0.3	1	23	358	380	358	380	0.99
10	16	8.7e-05	0.0082	17.5	0.5	1	23	386	409	386	409	0.97
11	16	0.00026	0.025	16.0	4.3	1	23	415	438	415	438	0.97
12	16	0.0012	0.11	13.9	2.5	1	23	444	467	444	467	0.95
13	16	0.046	4.3	8.9	1.2	1	23	473	496	473	496	0.94
14	16	0.00016	0.015	16.6	3.4	1	23	539	562	539	562	0.96
15	16	0.00061	0.058	14.8	1.6	1	23	570	593	570	593	0.97
16	16	0.0045	0.42	12.1	1.4	1	19	597	615	597	618	0.95

Sequence Information

Coding Sequence: ATGGAAATTTCTAAGCTAGAGGTCCATTCCTGCCACAAGTGTTTCGCGATATTCACAACCCAGAAGGAACTTGATGAACATTTATATTATCATGAAATATTGCCAACAGAATTACTTGATCATTTTTTAAGTGTAACAGTTTCATTGGAACGTATAAACGAATACATATGTAATGACTGCAGTAAAGTCTTTCCTACAGAAAGAGAACTGCGTCTCCATGAGGTGAAGCATATGAAAGATATGGTtatGAACAATAGATGCAAGAAACTAGATGAAGCTTACGAAAAGGCTGAGAAACCATATAAATGTGAGGTATGCGGAATTTGCTATGTGGCCGAGAGTACATTGAAAATGCACTCTGTGATCCACGAACCATTCCCGCATGTGTGCCATTGCGGTATTGGTTATTACATCACAGCAGATTTTAATAATCACCGAAAGCTCGTACATTCTGAAGCACCTCTTCCTGTTGAACAAATACCAATAGAAGGTAACGTGATAACTACACCAACAAAGAATAAAAGAAACAAGACCATAAAGAATGAGCAAGTTTGCAAACCAGATAATCAAGTGGgaaagagaaaaataaaaaaggaattgAAAgttgaaatacaaaaaaatgaaaataaatatgtaaagataggtaaaCAGTTTTTCTGTtctatttgtaataaaatgttttcatccAAGAAGAATATTATATACCATCAAGCGGTGCATACGGGTGAAAAACCATTTGAATGCAAGATATGTTATAAAACATATGCTCATGGTGCTGGTCTCCGGGCCCATTTGAAAAAACATAGTGAAGTAAAGAATTATGCATGTACGTACTGTGATAAGAAATTTTTTGATAGATATGGGTTAAAGCGACATACTTTTAGCCATACAAGAGAGAAAGTACTACAATGTGAGGTTTGTCATAAGGATTTCAGTGACCCATCTGGATATTTGAGACATGTTCGTATTCATACTCGGGAAACAACGTACCAGTGTAACATATGTCCAGAAAAGTTCAACGTACCAATTGCTTTAGCGAAACATAAACTGCAACATGAAGGCATAAAAAACTTCACATGCAACATATGCGATAAAGCTTTTTATGAAGCAGCCGCTTTAAGGAAGCATTTACGCAGGCATACAGATGAGAAGAAATTCCAATGCAATGATTGCTTAAAAAAATTTCCAGCAAAGAACAACTTGATACAGCATATTACAAGAGTTCATATACAAATGaaaaattttgtatgtaacagATGTGGTAATAAGTTTTGCACTAAAGCTGAACTTTGTAGGCACGTATCTACAGTTCATGAGAAACTGAGGAACTTTGAGTGTACATCATGTGGCAAATGGTTTTCCACTAAACAACACTTAGAGAATCATTTTAATAATGTCCACAAGCCGAATTATCATTTTGATTGTGATTATTGTTTGATAAAGTACAAAGCGAAGAGATCACTGAGCAAACATATTGTAAAAAGACATATGAATATTCAATGTGAGGTGTGTATGGAATGTTTTAGTTGTAATAGTATATTGATGGAACATAAAAAGTCACTCTGCAAAGGACCAATTGCGAGAAAGtcgaaaaaaattatgaaagtgAAGACATATGAATGTTACGAGTGTTTTAGAACGTTTACCATTAAATCTCAATTGAAAAAGCATCGCAATCTGTTTCATGGAGGTGGACAGCAAGCACTTTACATATGTAATGAATGTGGATCAGAGTTCAAATTACGGCACATGCTGATATATCATATACGTAAGAGCCATATGACAATCTATGCTTGCGAGTATTGCCGTTGCACGTTTTATAGTCAGAGTTCTTTTGTGAAACATGGAGCAGTTTGTGTGAAACCTGAACCCAACCCAcgtgaataa
Protein Sequence: MEISKLEVHSCHKCFAIFTTQKELDEHLYYHEILPTELLDHFLSVTVSLERINEYICNDCSKVFPTERELRLHEVKHMKDMVMNNRCKKLDEAYEKAEKPYKCEVCGICYVAESTLKMHSVIHEPFPHVCHCGIGYYITADFNNHRKLVHSEAPLPVEQIPIEGNVITTPTKNKRNKTIKNEQVCKPDNQVGKRKIKKELKVEIQKNENKYVKIGKQFFCSICNKMFSSKKNIIYHQAVHTGEKPFECKICYKTYAHGAGLRAHLKKHSEVKNYACTYCDKKFFDRYGLKRHTFSHTREKVLQCEVCHKDFSDPSGYLRHVRIHTRETTYQCNICPEKFNVPIALAKHKLQHEGIKNFTCNICDKAFYEAAALRKHLRRHTDEKKFQCNDCLKKFPAKNNLIQHITRVHIQMKNFVCNRCGNKFCTKAELCRHVSTVHEKLRNFECTSCGKWFSTKQHLENHFNNVHKPNYHFDCDYCLIKYKAKRSLSKHIVKRHMNIQCEVCMECFSCNSILMEHKKSLCKGPIARKSKKIMKVKTYECYECFRTFTIKSQLKKHRNLFHGGGQQALYICNECGSEFKLRHMLIYHIRKSHMTIYACEYCRCTFYSQSSFVKHGAVCVKPEPNPRE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00433350;
90% Identity: iTF_00433350;
80% Identity: -