Dpun000048.1
Basic Information
- Insect
- Dendrolimus punctatus
- Gene Symbol
- -
- Assembly
- GCA_012273795.1
- Location
- JAABVI010000084.1:6873-9640[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.8e-10 6e-07 29.4 0.0 1 38 8 46 8 51 0.93 2 2 7.8 5.4e+03 -2.4 0.0 2 10 156 164 155 165 0.80
Sequence Information
- Coding Sequence
- ATGCCAAAGATACCCCAGTATACAAAAGACGCCCTTGACGAGGcactagaaaaaataaatgataaaacaatGTCTTTGCAAGCGGTtgcaaagaaatataatatccCTAGGGCAACTTTACAGTTCAAACTAAAAAATCCTACTTCTAGATCTCAATTTGGGCCGACACCATATTTAACAGAGGAAGAAGAAGACACTATCGAAGACTGGTTAGTTAGAATGGCTCGCAGAGGCTTTCCAAGAAAGTCAGATAATGTTCTCGACACGGTACAAAAGTTTTTGTCTGATAATCCACGCGATACTCCTTTTGTCCATAATAGACTTGGTCAGGGGTGgttaaaagcttttttaaaacgTCACCCCAACTTAGCTCAAAGAACCAGCGAGGGAGTCACTAAAGCCAGTGCCTGTATTTCTGAAAATGACATAAAGAAATGGTTTCTTGAAATGAGGAATTACTTAACCAGTGAAAACCTGTTAGAGGCAATTCGTGATCCACAACGTGTTTTTAACGCTGATGAGACAGGATTTCAGCTTTGTCCTTCTACTGGTCGGGTGCTTGCCGCTAAAGGAGATAAGAATGTTTATGCCGTGGAACAAGGAAACTCCAAGTAA
- Protein Sequence
- MPKIPQYTKDALDEALEKINDKTMSLQAVAKKYNIPRATLQFKLKNPTSRSQFGPTPYLTEEEEDTIEDWLVRMARRGFPRKSDNVLDTVQKFLSDNPRDTPFVHNRLGQGWLKAFLKRHPNLAQRTSEGVTKASACISENDIKKWFLEMRNYLTSENLLEAIRDPQRVFNADETGFQLCPSTGRVLAAKGDKNVYAVEQGNSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00432074;
- 90% Identity
- iTF_00432074;
- 80% Identity
- -