Dpin027597.1
Basic Information
- Insect
- Dendrolimus pini
- Gene Symbol
- cheC
- Assembly
- GCA_949752895.1
- Location
- OX457148.1:5553344-5553844[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.3e-09 1.3e-06 29.0 0.0 1 38 8 46 8 51 0.92
Sequence Information
- Coding Sequence
- ATGCCAAAGATACCCCAGTATACAAAAGACTCCCTTGACGAGGCACTAGaaaaaataaatgctaaaacAATGTCTTTGCGAGCGGTcgcaaagaaatataatatccCAAGGGCAACTTTACAGTTCAAACTAAAAAATCCTACTTCTAGATCTCAATTTGGGCCGACACCATATTTAACAGAGGAAGAAGAAGACACTATCGAAGACTGGTTAGTTAGAATGGCTCGCAAAGGCTTTCCAAGAAAGTCAGATGATGTTCTCGACACGGTACAAAAGTTTTTGTCTGATAATCCACGCGATACTCCTTTTGTCAATAATAGACCTGGTCAGGGGTGGTTGAAAGCTTTTTTAAAACATCACCCCAACTTAGCTCAAAGAACCAGCGAGGGAGTTACTAAAGCCAGTGCCTGTATTTCTGAAAGTGACATAAAGAAATGGTTTCTTGAAATCAGGAATTACTTAACCAGTGAAAACCTGTTAGAGGCAATTAGTGATCCATAA
- Protein Sequence
- MPKIPQYTKDSLDEALEKINAKTMSLRAVAKKYNIPRATLQFKLKNPTSRSQFGPTPYLTEEEEDTIEDWLVRMARKGFPRKSDDVLDTVQKFLSDNPRDTPFVNNRPGQGWLKAFLKHHPNLAQRTSEGVTKASACISESDIKKWFLEIRNYLTSENLLEAISDP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00433073; iTF_00373898; iTF_00071347; iTF_01192573; iTF_01192591; iTF_01192592; iTF_01192593; iTF_01192594; iTF_01084181; iTF_01084183; iTF_00889118;
- 90% Identity
- iTF_00433073;
- 80% Identity
- -