Dpun012739.1
Basic Information
- Insect
- Dendrolimus punctatus
- Gene Symbol
- Rfx2
- Assembly
- GCA_012273795.1
- Location
- CM022534.1:2700181-2733972[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.7e-37 2.8e-33 114.7 0.0 3 78 229 304 227 305 0.97 2 2 1.8 1.4e+04 -2.9 0.0 24 31 639 646 622 654 0.64
Sequence Information
- Coding Sequence
- atgtcTGAATTGGGCTTTGAGCATGTATTCTATTTGGAGAACTTTGAGTGTGCCGGCGACGAAGTATTAGTAGAGTCTTCGCCGCCCGCCTCGCCGGACATGGCGGCGCGCCTTGCTGCGCCCGCACAGGGGGGCGGCGGAGCTGGTGGAACATCGCCTACTGCGGTTCGTGAGCTCATCGTTATACCGGAGCTACCGAACTCAATACACCTTCAGCATGCTATGCAACAAGTGTCAAGTGCAGTGGTCGAAGTGAACGGTGATAGTTCTGGGCATTCGAGTCCAACGGCTGATGCCCAGCATACCTACATTACTGTTTCCAGAGAATGCGTTTGGGAGGAAGACCTCTCGGTGTTTCAATATAAAAAGGAAGCTGACAGTGATCGCGAAAGTGAAAATGGCGGCGGTGTCAACTACCACGTTCAATATGTCACCGAGCCTCAAGAGATTTATACGCAAGGCCACCAAACGcatatGGAGGCACTGCGCTCGTACCCAGTTTACGGCGTGACCACCGTGGGCAATGAGGCCGCCGCCGAGGGCACGTCGGCCGAGGGCGAGTGGGGCGGGGCTTCGTCCGCCGAGTACACCGCTTATGGCGTCGTGGTTGCGGGCGACGAGGCGGAGGCGCCCGCGTCCCCCGCCACCCCCGCGGGCGCCCCGCAGCCCCCGCGCATGCCCCCCGCCACCGTGCAGTGGCTGCTCAACAACTACGAGACCGCCGAAGGTGTGTCGTTGCCCCGCTCCACGCTGTACGCGCACTACCTGCGCCACTGCGGCGCGCACCGTCTGGAGCCGGTGAACGCGGCGTCGTTCGGCAAGCTGATCCGGTCCGTGTTCGTGGGGCTGCGCACGCGCCGCCTCGGCACCAGGGGCAACTCCAAGTACCACTACTACGGCATCCGGGCGAAGCCCCACGGCGACGGGGACCACGTGCACCAGGACTCGGCCGACGACAAGACCGAACTCATCGACGCCCAGGAGGGCAGGTCGCGTTCGGGCGAGCGCGAGGAGGCGGCGAGCCCGTCGGGCGCGGCGGGCGCCGCGCACCGGCAGTACCTGGGCGCCGTGGCGGCGCCGCACCCGCCGCCCATCGTGCTCGCGCAGCCGCCCGACGACGTGCCGCTCGCCGCGCTCGACGCCCTCAGGCGCCACCATCGCGAGCACGGCGTGGAGTTCCTGGAGGCGGTGGCGGCGCTGGACACGGCGGCGGTGGAGCGCAGCCGGCGCGCGTTCTGGCGGCGGCCGCCGGCCGACCTGTGCCGGCGCGTGCTCTGCAAGCTCACCGCCAAGCGGGAGGTGGCCGTGTGGCTGCGCAACGCCGAGCTCGCCCTCTACCAGACCGCCGTCGAGCTGCTGCTGCCGGACGTGCTGCGCCCGATACCGGCGCAACTCACGCAGGCGATTCGTAATTTCGCCAAGAGCTTGGAGTCGGCCCTGTCGGTGGGCGCCGGGCTCGCCCCCGCCCCCGCTGCGCGCGCGCAGGCCTCCGCCGCGTCCGCGTTGGCCGCAGCCCTACGGCGGTACACGTCGCTCAACCACCTGGCGCAGGCGGCGAGGGCCGTTCTCACCAATCACCATCAGATCAATCAGATGCTGGCCGACCTGAACCGCGTGGACTTCCGCGTGGTCCGCGAGCAGGCGGCGTGGGCGTGCTCCTGCGGCAGCGCCGCCACCGCCCACAAGCTGGAGGCCGACTTCAAGGCGACGCTCGGTCGCGGCGCGTCGCTGGAGCAGTGGGCGTCGTGGCTGGAGGCGTGCGTGCGCACGGCGCTGCAGGCGCACGAGCGGCGCGCGGACTTCGCGAGCCGCGCGCGCCGGCTGCTGCTCGACTGGTCGTTCTACTCGTCGCTGGTGATCCGCGAGCTGACGCTGCGCTCGGCCGCCTCGTTCGGCTCCTTCCACCTCATCCGGCTGCTCTACGACGAGTACGTCGCGTTCCTCATCGAGCGCCGCGTCGCCGCGCACCGCGGCGCGCCGCCCATCGCCGTCATGCACCGCGCCCTG
- Protein Sequence
- MSELGFEHVFYLENFECAGDEVLVESSPPASPDMAARLAAPAQGGGGAGGTSPTAVRELIVIPELPNSIHLQHAMQQVSSAVVEVNGDSSGHSSPTADAQHTYITVSRECVWEEDLSVFQYKKEADSDRESENGGGVNYHVQYVTEPQEIYTQGHQTHMEALRSYPVYGVTTVGNEAAAEGTSAEGEWGGASSAEYTAYGVVVAGDEAEAPASPATPAGAPQPPRMPPATVQWLLNNYETAEGVSLPRSTLYAHYLRHCGAHRLEPVNAASFGKLIRSVFVGLRTRRLGTRGNSKYHYYGIRAKPHGDGDHVHQDSADDKTELIDAQEGRSRSGEREEAASPSGAAGAAHRQYLGAVAAPHPPPIVLAQPPDDVPLAALDALRRHHREHGVEFLEAVAALDTAAVERSRRAFWRRPPADLCRRVLCKLTAKREVAVWLRNAELALYQTAVELLLPDVLRPIPAQLTQAIRNFAKSLESALSVGAGLAPAPAARAQASAASALAAALRRYTSLNHLAQAARAVLTNHHQINQMLADLNRVDFRVVREQAAWACSCGSAATAHKLEADFKATLGRGASLEQWASWLEACVRTALQAHERRADFASRARRLLLDWSFYSSLVIRELTLRSAASFGSFHLIRLLYDEYVAFLIERRVAAHRGAPPIAVMHRAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00947631;
- 90% Identity
- iTF_00432871;
- 80% Identity
- iTF_00432871;