Dpin013838.1
Basic Information
- Insect
- Dendrolimus pini
- Gene Symbol
- -
- Assembly
- GCA_949752895.1
- Location
- OX457134.1:21675524-21687714[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8.4e-11 4.8e-08 33.5 0.0 4 39 179 215 176 219 0.89 2 4 8.1e-11 4.6e-08 33.6 0.3 2 39 231 268 230 271 0.92 3 4 1.7e-14 9.5e-12 45.4 0.0 2 45 286 330 285 330 0.96 4 4 6.7e-17 3.8e-14 53.0 0.0 1 43 337 380 337 381 0.96
Sequence Information
- Coding Sequence
- ATGCCCGGCCCGGGGTGGACTCAAGTGAAGTGCGAGCCGCCCTCGGACGACGAAGACACCGACGCACACTTCGCACGCCGTTTCATTGATAGCCAGcTTCCAAGTATCGAACTCCGTCCTGTTAAATTAGAGCCAGAAGTCATCAGCCAAAATGAAGAACTGTCATCGCATTTGTTGGAACTGGAAAATCTAGAgggcAGTGGCCTTGAAGAGTTGGCACCTCTGGCGCCGGCTGCTCCGGCCGCAACGCCGGTGTGCGTCAAGCAGGAGCCGGTCTGTGCACCAGCGGCATTCACTCTGGAAACTTTGGAGTCGGCATCACACGCTATGGGCTTTAGGGTTAGTGATCGTCACATGACAGCGTTGGGTACCGAGATGGGCGACTCAACCGACTTCGCCCCCTTCATGGCCGTAAAAGACGAGCCACTCTCCGAAGGagagCAACAGCAGTTGAGTGGCGATGATACGAGCGACTCATGCGGCGCACATTCGGAGTTCTCGATGAGGGCTAGTCCCAAGAGCTGGACTCAGAAGGACATGGAGAAGGCCCTCGAAGCACTAAGGAAACACGATATGAGTTTAACAAAGGCGTCAGCGACTTACGGCATACCGTCGACGACACTATGGCAACGGGCGCATAAGTTAGGCATCGACACGCCCAAGAAGGAAGGTTCTTCTAAGTCATGGAGCGAGGCTGACTTAAGGGGCGCCCTGCACGCGTTGAGGGCGGGCGCCATCTCCGCCAACAAAGCCAGCAAGGCGTATGGTATCCCGAGTAGCACCCTGTACAAGATAGCGCGTCGCGAGGGCATCCGGCTGGCGGCGCCGTTCAACGCGGCGCCCACGGCGTGGCGGCGCGCAGACCTGCAGCTGGCGCTCGCCTCCATCCGCTGCGGCGCCTGCTCCGTGCAGCGCGCGGCCGCACGGTACGGAATACCCACAGGCACTCTGTACGGGCGTTGCAAGCGGGAAGGCATTGAGTTGTCCCGCTCCAATCCCACGCCGTGGTCTGAGGACGCTATGGGGGAGGCCCTCGACGCTGTCAGAATCGGGCAGATGTCGATAAACCAGGCGGCCATCCACTACAACCTGCCTTATTCATCGCTTTACGGGAGATTCAAACGGTGCAAATATCAGACTCCTGGTACACCAAATCACGCAGAGCATCAGATCGATCAGCAGAATCACGAAATGGAAAATCATATACCCCCACAGGATCTCTACTATCCCCACCAAATCGCAGAGCAATTCCAATACCCGCGGGAATATCCACAAAATATGTTACAAGACGTACCCCAGGATTTTCCAGGAATGTATTACAACCAGTTCAACGGCATAGCGACCAGTTGA
- Protein Sequence
- MPGPGWTQVKCEPPSDDEDTDAHFARRFIDSQLPSIELRPVKLEPEVISQNEELSSHLLELENLEGSGLEELAPLAPAAPAATPVCVKQEPVCAPAAFTLETLESASHAMGFRVSDRHMTALGTEMGDSTDFAPFMAVKDEPLSEGEQQQLSGDDTSDSCGAHSEFSMRASPKSWTQKDMEKALEALRKHDMSLTKASATYGIPSTTLWQRAHKLGIDTPKKEGSSKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLQLALASIRCGACSVQRAAARYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALDAVRIGQMSINQAAIHYNLPYSSLYGRFKRCKYQTPGTPNHAEHQIDQQNHEMENHIPPQDLYYPHQIAEQFQYPREYPQNMLQDVPQDFPGMYYNQFNGIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00433062;
- 90% Identity
- iTF_00433062;
- 80% Identity
- -