Dpon010194.1
Basic Information
- Insect
- Dendroctonus ponderosae
- Gene Symbol
- -
- Assembly
- GCA_000355655.1
- Location
- NW:151630-159609[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.61 2.1e+03 -1.8 0.0 21 44 242 265 228 268 0.73 2 6 5.9e-05 0.2 11.0 0.3 14 46 266 298 258 301 0.90 3 6 9.6e-08 0.00033 20.0 0.4 21 45 301 325 297 328 0.92 4 6 0.033 1.1e+02 2.2 0.1 21 45 329 353 325 356 0.88 5 6 0.0012 4 6.9 1.0 21 44 357 380 353 387 0.92 6 6 0.23 7.8e+02 -0.5 0.2 21 50 413 442 402 445 0.83
Sequence Information
- Coding Sequence
- atgaaagttagtGAATACAGTaatcaaaaattgatgatgGAGGAACTTGATTTTGAAAAGATATGCCGAATTTGCCTGCATCAAGGAACTATGATGTCTTTATTCAAAGTCAGCATGTTCAAGAAAATGATGGCTATTGCCTCTGTTCAGgtttggcCAAACGATGGATTACCTGCACAAATATGTTCAAGGTGTGCTTCCAAGCTTTATATTGCTTTTCAATTGAAGAAGCAATGCGAAAGCTCTGACACAAAATTAAGATTGTATCAAGCTGCGATGCCACCGGAAGAAGAGAAGGTAGTTGACGAAAGTCAACCAAGCAAAATATCTAACAATAATGTGTCTGATAAGCTGGAAGTGGAACCACATAGTATATATATTCAAGCTAACAACAGTTCCATGATGGCAAATTTTAAACCTGAAGAGCCTAATTACGACCATTTTTTGATGGTCAACCCAAGTACCGATTCATATTCAGTACCTTACGCAAATTTATCGTCTAGCAATAGCCAAGTTCAAGTACCGACATATACTATGTCAGAGCATTTGgtttataatgaaaattcttATAGAATGTCGAACCAGCCACTTCAAACCAAACTTGAGGTTCAACCCACACAACTTATGCCTATGGAAATAAATACCCCACCGCCTCCAATTCAACCTGATCCGATAGAAACTAAGGAAACGGACACTTCTGAAAAAGACAGCAATAATAAAGAAGGACAAGAAGGCAAAGTCTGCACTGTGtgtggaaaaacattttcaactactTCAAAGTTAAACAGACATACAAAAATTCATTCTAGATtaccCACTGACCTACCGCATCAATGCCCTATATGCTTAAAAAGGTTTCGGCACACAGGCAATTACAAAATGCACTTGAGGATCCACAATAATGAGCGACCATTTACATGTCCAATTTGCTCAATGGGTTGTAGACAGAGTCaagatttggaaaaacatttgagAACACATACAGGTGAACGACCTCATAAGTGCTCATTCTGCCCAAAAGCGTTTGCTACAAGTTCAAATCTCTCGGCTCATATTCGAATACATACAGGCGAACGTCCTTATGTGTGCTGTATTTGTCAAAAAGCTTTTTGTCAATCCAATGAACTGACTAAACATATGCGAGGCCATACGGGAGAGAAAACTCATATTtgtgatatttgcaaaaaagGTTTTAATGGGTCCAGTGGATTATTGACTCATCGGCGACTACACACCGGTGAACGACCGTATGTATGCTCTCATTGTAACAAGAGCTTTGCTTCGTCCACTTGTCTCTACAGtcatataaaaatacacaaaaatgcTCTGCCACTCAAATGCACTCAGTGCGATCAGAGTTTTAAAActctattaaatttaaatgatcaCATAGCTACAGAACACAAAGTGGGGGAATTAATAATCTGTAAAATCTGCGATAGTGCGTTCGCAAAAGTAAATGAATATATACAACATATGAAATCACATGACGAAGTAGATAGTTAA
- Protein Sequence
- MKVSEYSNQKLMMEELDFEKICRICLHQGTMMSLFKVSMFKKMMAIASVQVWPNDGLPAQICSRCASKLYIAFQLKKQCESSDTKLRLYQAAMPPEEEKVVDESQPSKISNNNVSDKLEVEPHSIYIQANNSSMMANFKPEEPNYDHFLMVNPSTDSYSVPYANLSSSNSQVQVPTYTMSEHLVYNENSYRMSNQPLQTKLEVQPTQLMPMEINTPPPPIQPDPIETKETDTSEKDSNNKEGQEGKVCTVCGKTFSTTSKLNRHTKIHSRLPTDLPHQCPICLKRFRHTGNYKMHLRIHNNERPFTCPICSMGCRQSQDLEKHLRTHTGERPHKCSFCPKAFATSSNLSAHIRIHTGERPYVCCICQKAFCQSNELTKHMRGHTGEKTHICDICKKGFNGSSGLLTHRRLHTGERPYVCSHCNKSFASSTCLYSHIKIHKNALPLKCTQCDQSFKTLLNLNDHIATEHKVGELIICKICDSAFAKVNEYIQHMKSHDEVDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00431619;
- 90% Identity
- iTF_00431619;
- 80% Identity
- iTF_00431619;