Dpas032028.1
Basic Information
- Insect
- Delias pasithoe
- Gene Symbol
- MBD-R2
- Assembly
- GCA_010014985.1
- Location
- JAAAKR010000711.1:43631-51449[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.9e-17 7.7e-13 49.4 0.0 6 63 734 789 729 806 0.86 2 2 0.56 7.3e+03 -1.8 0.0 38 51 935 948 916 960 0.76
Sequence Information
- Coding Sequence
- ATGGCAGGGAAAAAATGTTGCATAGAAGGTTGTACTTCTTCATCATCCAGAAACGAAGACATTGGAGTCACATTTCATAAGTTTCCCAAAGATCCTGATCTATACAATACCTGGATTAACGTTACTCACATAAATCcgaatattgaaaatgttttttatgtgtGTTCAAGGCATTTTTGTAAAAgtgattttcaaatatatcaagaatcgaaatacatattaaagtcAGGAGCAATACCGTCTATTTTTTGTTGGACAATGGCAGATCGTACATTAAATTTGGAGGCACAAATTgaggaaatatttaaagatgattatgatgatagTGTTATAGTAGATACCAGCAAGGAGTCAGAACCAGAAAATATAGAATCAATCAAAAAACTAATAGAGGAAGAgcagcttttaataaaaaatgcacaTAAATTAGAGTCTTCAGAGGATTTGGGTTTAAGTGTATCAGCCTTAGATGTAATACACAAATCTCAAGATACTCATATTACAGCCAATAgtgatatgaatttaatagtaaatgtAGAATCAAAAGGTTATGACAAAGAGCAGTCAAAGTACAAGACAAGCACCAGTGATACAGGTACGGTAGCATTGTCAATTGGTTGTAAGGTAGATGCAAAAGATTTCAGTTGTCAATGGCACAGTGCTACTATAATTGAGGTAGATTATGATGAATTGGAAGTTTTGGTTCATTATGATGATTCTTCTAAcatgcCTGATGAATGGATAAGCGTAAACAGTACACGATTGCGTCCCTATAATCCAAACGGCGCTTTTGAAGTAGCGACGCCAACAATGCCGCCTAAAGCTATTGTACAGAGTTCTGATACACAATCCaaagatgataataaaatggaagagaaaaaaaagattacTTTTTTCGAAGGCGAGAGATGCTTAGCGCGATGGAGGGACAACAAAAGGTTTATGGCAACAATTCAAAAAGATTTAGGAGATGgcaaatttgaaataatatttgatgatGGGTTCCAATGGAAGTGTTCCATTTCACGGTTGCATAAGCTGAAAGATAGTAAATCTATTGAGAATCTCTCTGTAGACACTTCTGTATCAGGCAACACTTGTGCTTTGTCTCCTGTGACTGCTGGGTCAGGTCCACTTGGACTCCCGGCCTTCCATACGCACCTCTTCGACCCTACCAGGGACTACCTTGGATCCAAAAGCGAGAGGAGAGAAATGAAGAGAAAACTCAATATCaaggaaatatttaacattggccaaaagaagaagaaagttaAGCCAGATGATGCAGAACAAAAGGGCATAAAGAAGAAGTTCAAAGTCGAGCCCAAACTGGTTGAGATTAAAAAGGAATTACCTGAAGCAGTTGCCTCAATCATCGGCACCGTAGAAGAAACGAGAGACGAAGAAATGAAGCAGGAAGGCGAAATGGCTGAAGGCGATGGAGATATAGTCCAGGAGGAAATAACTTTGGCCGATTTGACTGACACAAAAGACACGGAGGCTTCGTATATGTCTGACTGCGATGCTAATGACTGTTCTGACCCGGTTTCTAACGAAGAGGACACTCTAGAGAGATTCGATAAACCCGACGAAAGCGTAAATGAAGCGGTTATCGATAGAATGAAGGAAGTGATTAGCAAACTGGAAAGCGGGTTGAACGAAGCGGACGAGAGCGCCGCGGCCGACTCGCTCGCAGGAGACGAGCCAGACCTCAACCTCGAAGTTATCCAAGTGGACCCAAATGGTGAGGAAGTTGATTTCGAGATGGAGGAACACCTCAAGATGAGAGCGGAGCTGGAAGAAGTCAAAGCAAAGCCGACACTAGACGAAGGGGCGAGTGCGTGTGTGAAAGTCGAAGAGAAGCAAAAGAAAGTCGCGTCTAAggtgaagaaaaataaaaagttgagGCTGTTGCACGAGAAGAAGGTTAAAAAGCAGGTCGAGAAGGTTAAGAATGAGTTAGAGGAGATGAAGCGACAGGTGGAAGAGATGCGAAAGCAAATGCTGGAAAAGACGCAGGAGCTCGCGGCGCGACAACAACAGAGGCCTCCGCACGAGATGCCGGAGAGCTTCCTGCTGGCGGGCGAGTGGTGCTGCCGCTGGGTGAACGGCGAGCCGGTGGGCCAAGTGCATGAGACGGAAGCTGAGCCCCGCTGCGACGCGCACAACAAGCCGGCGCTGCCGAAGCGGACCGTGCTGGTGGAAGATAAAAGATTGCCTTGTGGCTGGAAGAAGATTATGGTTCGAAGAAGTTTGGGACAATCCGCTGGGAAATGGGATGTCGTTTTAGTCagTCCGGACCAAAAGCGGTTCCACACGAAGCAAGAGATGCGAATGTACCTGGAGCAAAGCGGCGGGGAACTGAAGGCGTACGAATACGCCCTGCTAGATTTCAGCGTCCACTTGAAGCTGTCGCGTCGAATGGGCTGGGTGTCACAGACGGCGCCTGCGAATGCACCGCCCCCCGTCTCCAAAAAGGACGGCAGGAAGCAGCTGAAGATAAGGAAGCCCAATtaCATCCTACAGCGTCAGGAAGGAGACGCGGCTGAGCCGACCGGCCGAAGCAATGACCGCGCCGATGGCGATACGCAGAACCCTCCGATCGAGAATGGCTTTATATTCGTAGGATCCCTCAAAGTCCAAGTCATAGACAGCCTACTGAGATGTCCCGCCGAGGCATGTTTGAAAAACTTCCGAAACAATACCCTCTTGAAGATGCACATCAAGCACTACCATTGGGAACTGAAGAAACTGTTGGGCACGACGCCGAAGGTGTTGGACCTGGCCTACGCTCGCGCGAGGCCTGCCGGCGAGAAGCTCAGGAAGAAGAGCAAAGCGATGAAAACGCCCAAGAAGGGGCACACGGAGCCGGGACCGGACGCAAGCGAGCCGCTGCCGGAGCTGCGCTTGAATTTGCCGGTCCTGTCTCAAGAGGAAAGGCCGAAGGAAGATTCACCCAAGTTGCGGGAGGCGTTGGTGCCGAAACCGGTTAAGCGGCCAAAGGTGTTGCTGCCGGTTCGAAGACCGGAGCCGGAGCCCGTATCAGCCTCGGAGGAATTGGGGTCCGAGTTGGGTGGCAAGCCGGGCTCGACGGCAGACAAGGCAGTCGGGGACTTTGAGGACTTTGAGGCGTCCATTTCCACCCACACGGTCACCAGGCCGAGTAGTTTCAAGAGTGAAGAAGTGGAGCTGAAGCCGAAGCTGACGCTCAGCGAGGACGAGGACTGGCCGCACAATTCCGACATCGAGAGCAGGTCCAGCTTCCCGGGCTCGGCCACGCCCGAGTCGAAGACTATGGACAAGGGGATCCCCAACCTCCCGGCCGTCTCGTCGGAGTCCAACGAAGAGACGAAACGAGCCGACACGTACATGTATACAGAGAGCGGCGAGCGCATAAAGATCGAGCGCATGCGCCGCGAGGAGATAATCAACTGCCACTGCGGGTTCCGCGAGGAGGACGGCCTCATGGTGCAGTGCGAGCTGTGCCTCTGCTGGCAGCACGCGCTCTGTCACAACATCCGCACCGAAGCCGAGGTGCCCGAGAAGTACACGTGCAGCATCTGCCTGAACCCGCGGCGCGGCCGACGCTCGAAGCGCTTCCTTCACGACCAGGACAGGCTCTTCGAGGGCCTGCTCCCTGGCGCGAAGCCCTGCGACTTCCTGCGGCGGTCTCACGAGCTGTCCGGCAACTTGATCAGGATACAGGACGCGCTCCACGCCATGAGGGTCAAGTACTATGTCGCCACGAAGAAGAACCACCCGAAACTGTATTTGTGGGCGAAAGACTGGGAGAATACTGAACTGAACTTCACACAGGAAAGGCTGAACTCTGAATATTCAGACCTGAACATTATCATTAACAACATTGGCAAAGAGAATCTGCCAGTCAAGAGTAGTGCCGACGACGAGAGAGAGGCGCTTTTAAACTTGTCTGGAATGTCTCTAGATTTTCCCATTAGCACCACGGAGTTGGAGCGAATGGCTAGGTCCATACAAGAGCAAGAGTGCCGCGTGGCGGCGCCGCAGCCCGAGGCGGCGATCGAGAACAGCGTCTGCCGCGAGAGGCTGCTTCGGCACGTGCAGCGCTCCCAAGCCCAGATCGACTCCCGGCTCGACTCCATCGAGGCGCAGGTGGCCGAATTGGAATCTCAGGATCCATCGTTGGAAGACGACGAAACTGCCGACTACTTCCCTCGCACCAAGCAGACCATTCAAATGTTGATGCGAGATCTGGAGACTATGGAGGAACTGGGAGTTATAACTTGa
- Protein Sequence
- MAGKKCCIEGCTSSSSRNEDIGVTFHKFPKDPDLYNTWINVTHINPNIENVFYVCSRHFCKSDFQIYQESKYILKSGAIPSIFCWTMADRTLNLEAQIEEIFKDDYDDSVIVDTSKESEPENIESIKKLIEEEQLLIKNAHKLESSEDLGLSVSALDVIHKSQDTHITANSDMNLIVNVESKGYDKEQSKYKTSTSDTGTVALSIGCKVDAKDFSCQWHSATIIEVDYDELEVLVHYDDSSNMPDEWISVNSTRLRPYNPNGAFEVATPTMPPKAIVQSSDTQSKDDNKMEEKKKITFFEGERCLARWRDNKRFMATIQKDLGDGKFEIIFDDGFQWKCSISRLHKLKDSKSIENLSVDTSVSGNTCALSPVTAGSGPLGLPAFHTHLFDPTRDYLGSKSERREMKRKLNIKEIFNIGQKKKKVKPDDAEQKGIKKKFKVEPKLVEIKKELPEAVASIIGTVEETRDEEMKQEGEMAEGDGDIVQEEITLADLTDTKDTEASYMSDCDANDCSDPVSNEEDTLERFDKPDESVNEAVIDRMKEVISKLESGLNEADESAAADSLAGDEPDLNLEVIQVDPNGEEVDFEMEEHLKMRAELEEVKAKPTLDEGASACVKVEEKQKKVASKVKKNKKLRLLHEKKVKKQVEKVKNELEEMKRQVEEMRKQMLEKTQELAARQQQRPPHEMPESFLLAGEWCCRWVNGEPVGQVHETEAEPRCDAHNKPALPKRTVLVEDKRLPCGWKKIMVRRSLGQSAGKWDVVLVSPDQKRFHTKQEMRMYLEQSGGELKAYEYALLDFSVHLKLSRRMGWVSQTAPANAPPPVSKKDGRKQLKIRKPNYILQRQEGDAAEPTGRSNDRADGDTQNPPIENGFIFVGSLKVQVIDSLLRCPAEACLKNFRNNTLLKMHIKHYHWELKKLLGTTPKVLDLAYARARPAGEKLRKKSKAMKTPKKGHTEPGPDASEPLPELRLNLPVLSQEERPKEDSPKLREALVPKPVKRPKVLLPVRRPEPEPVSASEELGSELGGKPGSTADKAVGDFEDFEASISTHTVTRPSSFKSEEVELKPKLTLSEDEDWPHNSDIESRSSFPGSATPESKTMDKGIPNLPAVSSESNEETKRADTYMYTESGERIKIERMRREEIINCHCGFREEDGLMVQCELCLCWQHALCHNIRTEAEVPEKYTCSICLNPRRGRRSKRFLHDQDRLFEGLLPGAKPCDFLRRSHELSGNLIRIQDALHAMRVKYYVATKKNHPKLYLWAKDWENTELNFTQERLNSEYSDLNIIINNIGKENLPVKSSADDEREALLNLSGMSLDFPISTTELERMARSIQEQECRVAAPQPEAAIENSVCRERLLRHVQRSQAQIDSRLDSIEAQVAELESQDPSLEDDETADYFPRTKQTIQMLMRDLETMEELGVIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00430737;
- 90% Identity
- iTF_00430737;
- 80% Identity
- iTF_00430737;