Dero019548.1
Basic Information
- Insect
- Deinopsis erosa
- Gene Symbol
- zfh1
- Assembly
- GCA_027574845.2
- Location
- JAODFZ020041323.1:625-2241[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.00039 4.3 7.8 0.0 21 48 271 298 254 300 0.87 2 4 0.14 1.6e+03 -0.4 0.1 20 42 327 349 311 354 0.82 3 4 0.00037 4.1 7.9 0.1 18 46 381 409 373 415 0.87 4 4 6e-06 0.067 13.6 0.3 21 48 412 439 409 443 0.92
Sequence Information
- Coding Sequence
- ATGAATGAGGGAGAGGAACTTAATAAGACTGGCGCATTATTGGCACCATCAAATGTGGAGTGTATATGTCGTTTATGCGCGACAACAAGTGATAAGACAATTCACATCTATGGGGAGGAAGCAGGCAGCGATTTAGCGACGAAAATCAACCAATTTCTTCCAATACAAGTAAATCAGCAGGACACACATTTACAATGCTGTTTAACATGCTACTCAACGCTAGAAGCGtatagtttattatatattacatgTTTGGACGTTGATAGGCGGCTGAAGGACGTGCAAGTGGAGGAAATTAAGGGATTTGAGGATGAGGAAATAAGTATACAGTGCACGGAAGAATCGGACGAGGAAACGGAAGATAACCCCGAATACATCTTACCCACCACATCAAAAGAACCTACAAATAGCGAAACATCTAATAATATAGAATTGGAGGACGATGTAAGTCTGAATTGCTTCACAAACGCTTCACTAACCACAGCACCAAGTGATTCAACTGAAATAAAGGAAGAGGAGCGCTCGAATGATTGGACGGTGAAGAATGAGCATTCTGATGATTGTCACTACATTTGTGAGCATTGCAACGAGAGTTTTGATACGGAGCTGGCGATTCTCGATCATATGAAGGAGAAGCATTTGGCGAGTCAGAATCGGCGTATCGTTAACTCGAAACATACGAAATTGGACCAGGATGCGATAAAGAACGCGAAATTGACGGTGGGCGGTAAAGTGTACTATAATTGCAAGGAGTGCGGTAAGAATTTGCATTCGCCGTACACGTTCGTTTGGCATATGCGTATTCACACGGGAGAGCGGCCGTACGTGTGCGATTTGTGCGGTAAACAGTTCCGCGTCTCCCAGGGCCTCGTCAGACACTTGAAGGAGACGCACGAGGGCATCAAAAACTTCCCGTGCGATTTGTGCGGGCGAATGTTCGCGACACGACGCAATGTCGTCGAGCATCGACGCATTCACACCAACGAGCGACCGTACATTTGCGATTTGTGTGGGAAATCGTTTAAGCAGAAAGCGTCTTTGTATGTGCACAATCGGTCGCACACCGACTCCTTCCCGCATCGATGCGGCTACTGCAATCAGGGCTTTCGCACCAAACCGCCGCTCCTCATACACATTACGCGGCATACGGGGGAGAAGCCGTATCCGTGCGAAATATGCGGACGCTGTTTTCGCATCAAATACGAATTGAAGCGGCATATGTTGATTCATTCGGATGAGAAACCGTTCGTGTGTAGTGTGTGCGGTGTCACCTTCCGACAGAAACGCTATTTGCGCAATCATGCTCGCATCAATCACAATAATACTGAACCGATATAA
- Protein Sequence
- MNEGEELNKTGALLAPSNVECICRLCATTSDKTIHIYGEEAGSDLATKINQFLPIQVNQQDTHLQCCLTCYSTLEAYSLLYITCLDVDRRLKDVQVEEIKGFEDEEISIQCTEESDEETEDNPEYILPTTSKEPTNSETSNNIELEDDVSLNCFTNASLTTAPSDSTEIKEEERSNDWTVKNEHSDDCHYICEHCNESFDTELAILDHMKEKHLASQNRRIVNSKHTKLDQDAIKNAKLTVGGKVYYNCKECGKNLHSPYTFVWHMRIHTGERPYVCDLCGKQFRVSQGLVRHLKETHEGIKNFPCDLCGRMFATRRNVVEHRRIHTNERPYICDLCGKSFKQKASLYVHNRSHTDSFPHRCGYCNQGFRTKPPLLIHITRHTGEKPYPCEICGRCFRIKYELKRHMLIHSDEKPFVCSVCGVTFRQKRYLRNHARINHNNTEPI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00430063;
- 90% Identity
- iTF_00430063;
- 80% Identity
- iTF_00430063;