Dero019647.1
Basic Information
- Insect
- Deinopsis erosa
- Gene Symbol
- -
- Assembly
- GCA_027574845.2
- Location
- JAODFZ020041553.1:2882-5843[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.1e-05 0.0021 18.7 0.7 1 23 134 156 134 156 0.95 2 15 0.00031 0.031 15.1 0.3 3 23 164 184 163 184 0.99 3 15 8.3e-05 0.0082 16.9 0.1 1 23 285 307 285 307 0.98 4 15 0.023 2.2 9.2 0.2 1 23 313 336 313 336 0.96 5 15 1.7e-05 0.0017 19.0 4.1 1 23 362 384 362 384 0.97 6 15 0.0035 0.34 11.8 0.0 1 23 397 419 397 419 0.94 7 15 0.0028 0.27 12.1 0.1 1 23 425 448 425 448 0.97 8 15 0.0034 0.33 11.8 4.4 2 23 456 477 456 477 0.95 9 15 0.0003 0.03 15.1 5.6 1 23 483 505 483 505 0.98 10 15 0.0029 0.29 12.0 1.4 2 23 511 532 510 532 0.97 11 15 6.9e-06 0.00068 20.3 0.4 1 23 540 562 540 562 0.98 12 15 0.003 0.3 12.0 0.2 3 23 570 590 568 590 0.97 13 15 9.5e-05 0.0094 16.7 0.3 1 23 596 618 596 619 0.95 14 15 0.029 2.8 8.9 1.5 1 23 633 655 633 655 0.96 15 15 0.00082 0.081 13.7 0.1 1 20 944 963 944 966 0.94
Sequence Information
- Coding Sequence
- ATGGAGGACTCGTTTACATTGACATGGGACGATGGCGGTGCCGAGATTCAAACCGAAGAAGTGATATGTGGTATTGATAACGAGAATATGATTGAAGCGAGTGAATGCAATGAATTTAACGAAGTATGCGAAGAGGTGGTGGTGCAAGGTGATGAGCAAGAAGTGATCACCGAAGATGGGGAAGTGATGTATCTAACCGATGAGAACGTTCTAGTCATGCAACAGCCGAATGAACCCTCAATTATGGAATTTACTGAAGAAGTTGTCGCCGATCAATGGGAGGAAtgcaatgaattaattgtcGGTAATGAGGAACATGTCGGTGAGGCGGATGAACAAACCGATGATATTATTATACCATTACCAACCGATCAGGACCAATATTCGACGGCTCGGCCGTATCCTTGCGACTTTTGCAGTCGACGTTTTCGTAAAAAGGCGAACTTAATGAACCATATGGTAGCACATCAAACAGATAAACCGCATGGATGCAATTTATGCGGTGTACGTTAcgttagaaaatttgatttgatgaaTCATTTGAAAATTCATGCGTATGTGCCGGAAACGGAGAATTTGGAGGAGGAATTGCCGGACACCGATTATGATAAATTGCGAAAGAGGCAAAAACCTTCATTCgtgaagaaaaagaaaatgaaaccTAGAATCAAAGAGGAATATGACCATGAAAAGGGCGCTTCAAGTTCTCGATCGTACGATTACGTCGATGAGGATGTACGTTTAATGGAATCGATGGAAAGCAGTTCGGGAAATGAGTACAATGACTATATGCAGCGGAATGATCATTCAATGAACGATACAAGATATCCGATTACAGATCCACGCAAACCTTTTGTATGTCAGCATTGCGGCGTTGGTTTCGCTAGAGAAAAGGCGCTTGCATCACACGCGCGAATCCATGCAGGTGATAGTCCATTCGAATGTCGACGATGCGGCGAAATGTTTTGGGATGCTGATTTAATGCGagaacatataaaaaataaacatgatGGCATTGAGGATGATTTCCTTgacgacgatgatgatgatgagtttTCAGACGAGGACGGCAAATATGGCGAATTCTTTTGTTCTACATGTGGCATGTCATTTCATCGCAGTGACTTATTGAAACGTCATCAGCGTTTACACATCAAGGAGGAGTATGTGAATGAAGGTGAATTTGGACATATATGTAATGTGTGCGGCGAATCATTTCCTGAAGCACTAGATCTACTCGCACATGCTGAAATACATGCGAGAAGCTCGGAATATCGTTGCATGATTTGCGGTGAAGTTTGCCCGGACGATCAGTCACTCGCAGCGCATGTACAATCAAAACACGGTTCAACTCTACCGGAAAATACATGCATGCATTGTGGTAGAACGTGTAAAGATAAACGTACGCTAATTAATCACGTATTGGAACATACCAAGGAAAAGTCATTCTCATGTCAGAAATgtcaaaaacaatttcataacaAGGCGCGCTTGAAACGACACATGCTGTCACATCGAAATAAAGCTGTAACGTGTGATGTATGCGGTGAACATTTCCCTGATGGGCGCAGTCTGATGAACCATCGACATAGTCATAGCAGTGTGTCAGGCCGGCAGTTCCCTTGTCGCGAATGCGGTAAGACATTTGGATCGCGCAGCTCACAACAAATTCATATTCGCATCCATACTGGAGAACGGCCGTATGGCTGCCGTTTTTGTTGGAAAGCGTTCGCCGATGGTGGCACGCTCAGGAAACACGAACGTATCCATACCGGTGAGAAACCTTATGCATGTGCAGTATGTCCACGAGCTTTCAATCAGCGAGTCGTTCTACGTGAACATATACGGTCACATCATTCAGGCCCTGATCCAAATTATAGTCATAGTATGACGCCATATTGTTGCGCCGTTTGCTCGGACATGTTCTCAACGTCGCAAgatttaattgtacatttaatTCATCATTGTGATTTGAATACGGCAATGCGAAGACAGCCGCAAATTGGACCGAGAAAGTATAAGCGCCGACGCAAATTGAAACCTCATGAATTGGAATTGCTATCGAATAATGTTGAATATGAGGAAGAGGAGGTGCACGAAGAGAACGAATTCTCTGATTCCGATGATGATTCCGATAAGAAGCGAAAGaagaaacaaagaaaaaattcaacaaaatcgAATGATGATTTCACCAATGATGTATACAATAATAGCTTTTCGCCAGTGCaagaaaatatgaatgtaattgttaataataagcCGCTAAAGCAGAAAAAGAAGCAAAAGGAGCAAATCGTGCCGTCGCGGCCGAAAATGATTCACACGCAAAAGACTAAAGTTCCCGTTGAGAATGCGGATGGAGGTAAAGTACGacataaaactaaaacattAATAACACGTACACAACCAACTGATATGAAAGTATCTAGCGATCGTATACGACCGCGCACTAAAAATGTAAGTTACCACATATTAAATCCAGAAAAACTACCTGTAGCTACCTTCCCCGAGGATGATACCGAACAAGCAGTCAATAGCTTACTAAACGAGCATTTGGATCGTAACGGCGAACTGTCGGATGATTTACCACGCAAGAAACAGACAAATAATAGTTTATCGCCGGGCAGACACATAATTGGTCCCGGCCATATCGTTAAATACGTTAAAAGTGGCATGTTAGTTTCAAAAAAGAAAGTCAAAACTGAGGAAATCGAACAGGAGAACGTGATTGAGGAGATGGTTGATAATACAATCATCATTAAGCAGGAGGAAATGGATAATCCGCTCAATGAGCTCGCTGAACTTTCCATGCAGCATGCTCAGAACATTTTCAAATGTGAAATGTGCAGTGCCACATTCTCAGATCGTGCCCAATTACTCGTACATGTCCCTATACATATCTGA
- Protein Sequence
- MEDSFTLTWDDGGAEIQTEEVICGIDNENMIEASECNEFNEVCEEVVVQGDEQEVITEDGEVMYLTDENVLVMQQPNEPSIMEFTEEVVADQWEECNELIVGNEEHVGEADEQTDDIIIPLPTDQDQYSTARPYPCDFCSRRFRKKANLMNHMVAHQTDKPHGCNLCGVRYVRKFDLMNHLKIHAYVPETENLEEELPDTDYDKLRKRQKPSFVKKKKMKPRIKEEYDHEKGASSSRSYDYVDEDVRLMESMESSSGNEYNDYMQRNDHSMNDTRYPITDPRKPFVCQHCGVGFAREKALASHARIHAGDSPFECRRCGEMFWDADLMREHIKNKHDGIEDDFLDDDDDDEFSDEDGKYGEFFCSTCGMSFHRSDLLKRHQRLHIKEEYVNEGEFGHICNVCGESFPEALDLLAHAEIHARSSEYRCMICGEVCPDDQSLAAHVQSKHGSTLPENTCMHCGRTCKDKRTLINHVLEHTKEKSFSCQKCQKQFHNKARLKRHMLSHRNKAVTCDVCGEHFPDGRSLMNHRHSHSSVSGRQFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHIRSHHSGPDPNYSHSMTPYCCAVCSDMFSTSQDLIVHLIHHCDLNTAMRRQPQIGPRKYKRRRKLKPHELELLSNNVEYEEEEVHEENEFSDSDDDSDKKRKKKQRKNSTKSNDDFTNDVYNNSFSPVQENMNVIVNNKPLKQKKKQKEQIVPSRPKMIHTQKTKVPVENADGGKVRHKTKTLITRTQPTDMKVSSDRIRPRTKNVSYHILNPEKLPVATFPEDDTEQAVNSLLNEHLDRNGELSDDLPRKKQTNNSLSPGRHIIGPGHIVKYVKSGMLVSKKKVKTEEIEQENVIEEMVDNTIIIKQEEMDNPLNELAELSMQHAQNIFKCEMCSATFSDRAQLLVHVPIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01400609;
- 90% Identity
- -
- 80% Identity
- -