Dero004156.1
Basic Information
- Insect
- Deinopsis erosa
- Gene Symbol
- egg
- Assembly
- GCA_027574845.2
- Location
- JAODFZ020008545.1:323-3522[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.1 7.9e+03 -3.1 0.0 46 58 156 168 155 208 0.68 2 3 2.7 1e+04 -3.5 0.1 32 38 534 540 529 542 0.85 3 3 7.7e-13 2.9e-09 36.7 0.1 7 75 576 638 573 640 0.91
Sequence Information
- Coding Sequence
- atggatgaaaagaaaaaatcggATACTCACGAAGTTAAAAATCAACCGCTTGAAATGATTGTGCTGGATGAAGAAGATCCAAAAGAATCTAAACAATCTACTAGcaaatgcattaattactTATGTACCAGTGGCGTTAATCTTATATCAACTCCCTTGTTCTGTTTGTCATATTATCGTGTTCGTAATGAAACTAAGAAATATCAGAAAATTTGTAAAGAATGTTACGACAAGGCTGTGGAACATAATGATACACTTTGTCATAAGTTtatgaataatgaaaacatATTGGATGTAGATTTTTCCATTCGTCATGAAACAGTAACCATAGATGATTCAGATTCGGACACAGAATATGAAGttgaaaataaaacttatattaGCGATGAAGCTGTGAAGACGATTTCTGAAAATATAGATGAAATTACAGAGGAATTGatcaagaaatttaattacgatctgaaaattaatgaagctgcagaatatttacaaaagaaatatgatgaaaatagcggtTCATATTTGGAAGTTAAAACTATGCTGGAAACTATACGAAGAGATGTTGATACAATGCTAATTGAAACCTATGATAGTTTACGTCCCGATAATATTCTTTTAGATCCCCTTGAAATAGTATATGATAAAGATGAATCTAAAAGAATTATTGAaggtGGTGTTGAATTCGGTTATAGAGAGCCTCCAACAGACCTACCCAAACAAGGAACGTTAAATAGGCCTTCATTGCGCTTaggtcaatattattatattaagcaTACAGCAACACTATGTTCATGGAGTCGCTTTAAACTCGAAAATATAGTATcagataacaataaaatattaagttttgttgttgtacgTGAGACTGCTAAAAAAGTCATACAACGAATGAGTATAACAACAAAGGAATTAGCTTACTCCCAACCACCTAATGCGTTATTGGATCATGGTACAAGAGTTATTGCATTATTTGAACATGATATTATTCAACATAATAAACGTGATTCCTACTATGCTGGAGTTGTTGGCGAGTGTCCTTGCAGCTACAATAATTATAGatatttaatattctttgATGACGGATATTCGAATTATGTAGATTATAAACATGTATTTTTGGTATATGAAAGCAGTCATAATGTGTGGGAAGATGTTCATCCAGATTCTTctgaatttataagaaaatatttagcaCAATATCCAAATCGTCCAATGGTTAGATTAATGAAAGGGGGCCATGAACGCACTGAATTTAGAGGAAAATGGTACACTGCAACCGTAAGAAAGGTCGATTGCTCATTGGTACAAATGCATTTTGATGCACTGAAACGCAGTGAATGGATATATCGAGGTTCCAGACGTTTCCGAATTTTGTATAATGAAGAATTGGCAGCAACTAAACGAAGATCTCAATTCCATCCACGGGCAGGCATAACACGGGGAGTTTCGTTTACTCCAAATGAAACAATTGTTGTACCAAGCGAAGATggagataataaaattcaacaaaagTCTTTTGCTAGAAAAAGTACAAAGCCACCAATAGAATCTAACGAAAATAAACCTAAAATAGTTAAACAAGATAGCCGACCACCCGGTAAAATTATATATTACACACCGAGAAAACAGCACCCGAAACTACAAATTCCTGTTAAACATAGATGTTCGGAATCATGCCAAAGTCACATGCTCACATCGCTATCTAGATTGAAAGGATATGGACCACTTGCTAAACCCTTGTTATGCGGATACTATCGTTTAATGTACAAAATGAGACAAAAACAACCATTCATAGTATATAAAACACCATGTGGTCGAAGTATAAGAAATATGGAAGAATTACATCATTATTTACGCACCACCAAGTGTCAGCTATCAGTggatttattttcatttgataCGCGTGTACGGTGTTTAGCCGAGTTTATTTTGGAACCCAATAATCCTATAATGAAGGATTTATCATGCGGTATTTATATACTATATACACACTGTCCCAGCTAA
- Protein Sequence
- MDEKKKSDTHEVKNQPLEMIVLDEEDPKESKQSTSKCINYLCTSGVNLISTPLFCLSYYRVRNETKKYQKICKECYDKAVEHNDTLCHKFMNNENILDVDFSIRHETVTIDDSDSDTEYEVENKTYISDEAVKTISENIDEITEELIKKFNYDLKINEAAEYLQKKYDENSGSYLEVKTMLETIRRDVDTMLIETYDSLRPDNILLDPLEIVYDKDESKRIIEGGVEFGYREPPTDLPKQGTLNRPSLRLGQYYYIKHTATLCSWSRFKLENIVSDNNKILSFVVVRETAKKVIQRMSITTKELAYSQPPNALLDHGTRVIALFEHDIIQHNKRDSYYAGVVGECPCSYNNYRYLIFFDDGYSNYVDYKHVFLVYESSHNVWEDVHPDSSEFIRKYLAQYPNRPMVRLMKGGHERTEFRGKWYTATVRKVDCSLVQMHFDALKRSEWIYRGSRRFRILYNEELAATKRRSQFHPRAGITRGVSFTPNETIVVPSEDGDNKIQQKSFARKSTKPPIESNENKPKIVKQDSRPPGKIIYYTPRKQHPKLQIPVKHRCSESCQSHMLTSLSRLKGYGPLAKPLLCGYYRLMYKMRQKQPFIVYKTPCGRSIRNMEELHHYLRTTKCQLSVDLFSFDTRVRCLAEFILEPNNPIMKDLSCGIYILYTHCPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -