Dtri028468.2
Basic Information
- Insect
- Dasysyrphus tricinctus
- Gene Symbol
- -
- Assembly
- GCA_963921185.1
- Location
- OY992531.1:73099383-73103918[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.023 4.6e+02 3.1 0.1 22 48 13 39 5 45 0.83 2 10 0.029 5.8e+02 2.8 0.2 23 45 42 64 38 67 0.88 3 10 0.00016 3.3 10.0 0.6 20 48 67 94 60 99 0.84 4 10 0.041 8.1e+02 2.3 0.2 21 44 96 119 94 123 0.91 5 10 0.00067 13 8.0 0.1 20 45 123 148 120 152 0.88 6 10 0.021 4.2e+02 3.2 0.1 21 48 252 279 243 285 0.82 7 10 0.029 5.7e+02 2.8 0.2 23 45 282 304 278 307 0.88 8 10 0.00015 2.9 10.1 0.2 20 48 307 334 303 339 0.85 9 10 0.043 8.5e+02 2.2 0.2 21 44 336 359 334 362 0.91 10 10 0.00068 13 8.0 0.1 20 45 363 388 360 392 0.88
Sequence Information
- Coding Sequence
- AtgcataaaaaagagaaacacgATCATAATCCTGCCGAAAATAGTTACGCTTGCAATTTGTGTCAAAAAACCTTTGCTAATCATGGCAATTTAGAACGTCATATGAAAGTTCACAATGATGTCAGACCTCATATTTGTAAcgaatgcaaaaaatctttCGCCCAAGCCGTGAATTTGCAACGCCACTATTCTGTACACAACGGTGAAAGACCTTATCAATGCCAGTTATGTGATAAATCCTTTACCCAGCAAGGAAATTTGCGACGTCATGAACTAATCCATACAGGCGAGAAACCATTTCAATGTGAGCGATGTAATCGTTCGTTTTCTCAGAGAATCAATCTTAAGAAGCACATGATGGCTCATCAAGGTTTTCGACCTTATGTTTGCAATGTCTGTCAAAAGTCATTTATACAATCTCAAAACTACAAGAAACACCTCAACAAACATCAGAAAGAGACAGTTAGACAGGAGCAGGCTGATGCTGCATTGGCAAAGGTTAATATTGAACCAGCGATaaCAACGTTTGGAGCTACGTTAGCTAAACTTAAAATGGATCCAATgaTGTACGATAGTGGTGGGCAGAGCCGACCGGTATTCGAGcaattaaataatttcgaatCAACTGAGTTCTCTAACGGTGTTATTAATGCAATTGACGCTGTGGCAAGTGCAGTGGAGCACAATTATGGAACATTTAACTCCAAACACGATCAACTAAtgcataaaaaagagaaacacgATCATAATCCTGCCGAAAATAGTTACGCTTGCAATTTGTGTCAAAAAACCTTTGCTAATCATGGCAATTTAGAACGTCATATGAAAGTTCACAATGATGTCAGACCTCATATTTGTAAcgaatgcaaaaaatctttCGCCCAAGCCGTGAATTTGCAACGCCACTATTCTGTACACAACGGTGAAAGACCTTATCAATGCCAGTTATGTGATAAATCCTTTACCCAGCAAGGAAATTTGCGACGTCATGAACTAATCCATACAGGCGAGAAACCATTTCAATGTGAGCGATGTAATCGTTCGTTTTCTCAGAGAATCAATCTTAAGAAGCACATGATGGCTCATCAAGGTTTTCGACCTTATGTTTGCAATGTCTGTCAAAAGTCATTTATACAATCTCAAAACTACAAGAAACACCTCAACAAACATCAGAAAGAGACAGTTAGACAGGAGCAGGCTGATGCTGCATTGGCAAAGGTTAATATTGAACCAGCGATaaCAACGTTTGGAGCTACGTTAGCTAAACTTAAAATGGATCCAATgaTGTACGATAGTGGTGGGCAGAGCCGACCGGTATTCGAGcaattaaataatttcgaatCAACTGAGTTCTCTAACGGTGTTATTAATGCAATTGACGCTGTGGCAAGTGCAGTGGAGCACAATTATGGAGTGCGATATATAAATCAATCGTTataa
- Protein Sequence
- MHKKEKHDHNPAENSYACNLCQKTFANHGNLERHMKVHNDVRPHICNECKKSFAQAVNLQRHYSVHNGERPYQCQLCDKSFTQQGNLRRHELIHTGEKPFQCERCNRSFSQRINLKKHMMAHQGFRPYVCNVCQKSFIQSQNYKKHLNKHQKETVRQEQADAALAKVNIEPAITTFGATLAKLKMDPMMYDSGGQSRPVFEQLNNFESTEFSNGVINAIDAVASAVEHNYGTFNSKHDQLMHKKEKHDHNPAENSYACNLCQKTFANHGNLERHMKVHNDVRPHICNECKKSFAQAVNLQRHYSVHNGERPYQCQLCDKSFTQQGNLRRHELIHTGEKPFQCERCNRSFSQRINLKKHMMAHQGFRPYVCNVCQKSFIQSQNYKKHLNKHQKETVRQEQADAALAKVNIEPAITTFGATLAKLKMDPMMYDSGGQSRPVFEQLNNFESTEFSNGVINAIDAVASAVEHNYGVRYINQSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00427486;
- 90% Identity
- iTF_00427486;
- 80% Identity
- iTF_00427486;