Basic Information

Insect: Dasysyrphus tricinctus
Gene Symbol: ND-42
Assembly: GCA_963921185.1
Location: OY992531.1:4473590-4482671[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.93 2.6e+02 4.4 0.2 2 23 304 328 303 328 0.80

2 13 0.0023 0.63 12.6 7.7 1 23 334 356 334 356 0.98

3 13 6.1 1.7e+03 1.9 0.2 3 10 363 370 362 380 0.89

4 13 1.7 4.8e+02 3.6 0.2 2 11 391 400 391 414 0.85

5 13 3.1e-05 0.0085 18.5 6.9 1 23 420 442 420 442 0.98

6 13 6.2e-06 0.0017 20.7 1.4 1 23 448 470 448 470 0.98

7 13 3.7e-06 0.001 21.5 3.1 2 23 476 497 475 497 0.97

8 13 0.42 1.2e+02 5.5 1.9 3 20 506 523 505 527 0.87

9 13 0.00016 0.044 16.3 1.3 1 23 552 574 552 574 0.99

10 13 7.2e-06 0.002 20.5 1.4 1 23 580 603 580 603 0.96

11 13 2.8e-05 0.0076 18.7 0.7 1 21 609 629 609 632 0.89

12 13 2.3e-05 0.0064 18.9 1.0 1 23 638 660 638 660 0.98

13 13 1.5e-05 0.0043 19.5 0.7 1 23 666 688 666 688 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.93	2.6e+02	4.4	0.2	2	23	304	328	303	328	0.80
2	13	0.0023	0.63	12.6	7.7	1	23	334	356	334	356	0.98
3	13	6.1	1.7e+03	1.9	0.2	3	10	363	370	362	380	0.89
4	13	1.7	4.8e+02	3.6	0.2	2	11	391	400	391	414	0.85
5	13	3.1e-05	0.0085	18.5	6.9	1	23	420	442	420	442	0.98
6	13	6.2e-06	0.0017	20.7	1.4	1	23	448	470	448	470	0.98
7	13	3.7e-06	0.001	21.5	3.1	2	23	476	497	475	497	0.97
8	13	0.42	1.2e+02	5.5	1.9	3	20	506	523	505	527	0.87
9	13	0.00016	0.044	16.3	1.3	1	23	552	574	552	574	0.99
10	13	7.2e-06	0.002	20.5	1.4	1	23	580	603	580	603	0.96
11	13	2.8e-05	0.0076	18.7	0.7	1	21	609	629	609	632	0.89
12	13	2.3e-05	0.0064	18.9	1.0	1	23	638	660	638	660	0.98
13	13	1.5e-05	0.0043	19.5	0.7	1	23	666	688	666	688	0.97

Sequence Information

Coding Sequence: ATGGACAGTGTATTTATTAATGATTACGGCCTTGATATGCGAAAGTTAGATGACCAACTTCCTGAGATGTGCCGCAGTTTCGATGAGAAGGATTTCTTGCGAAACCCAAACCATCCGAGCACACAGCGTTTATCACGAAATAAGCAAAACACCATCAATGAGTTGATGAAACCACATTTGGTTATTTACCTAGATTGCCCCGTCAATGTGATTAAgaaCGCATCAAGGCTCGCACTCTGGACTACGAGTCTCAGTCCAAAGTTTTCACGGATGCATATCTTGCTGACATGGAGATTTACTATAAACAGTATTTCCTTAAAGACATCAGTACTCATGCCGACATTCTTGTTTATGATTGGACCGCTGAAGAACTCGCATTTGATAGCCTTGAAAATGAGTATTGCAGATAGGACCTGTAGAACCTGTGGCAAAGCATCAGAATTGAATGATGAATCAGTTCTCTTACCAATCTTCAAACCAGTCGATTTTGGGTCTGAACTAAAAGTTATATTTGAAGAATTCGAAATATGGAATTTAAATatATCCCAAAACGATGGTCTACCACAACAAATTTGCGTAACTTGTTTTGATAGTTTTTGCCAAATTCATAATTTTCGTATATTGTGCATAGAAGCACAAATGAATTTTGGAGAAATGTGTACAGGGTTGGATATAATTATAAAAGATTCATTGTCAGACGAAGATAATGATTTTTCGgaaaatttttttggagaaGAGTCTGTGATTGTTCAAGAGTACTATAAATTTCCCGGTGATGAGCGTTTGAAATCATGTGCTTCACCAGACTTAGCTGACACTATTAAAAAGCCTCTTGATTCTGACGCGCAAGATACAATTAAACAAGAGCTCGATGAATCAAATGCCGTTATTcctgaattcaaaaaatatcgATGTGAGTTCTGCATGGAAATTGTAAGTTTCGATGACCTTGACCAGCTGAATGAACATTACAATAAATTGCATTTAACCAATCTACCCTATACGTGCCACAAATGTGACAAGTGCTTTGATTCAAAAGCAAAACGAAACAGTCATTCACGAATGCATTACCGAATAGTTGTTGATTGTGAGAAATGCGGTAAGAAGGTGAGAGGTGGAAAAAGAATGTTGATCCAGCATAATGAAAACAATCATGTGAACAGAGACCGTGAATGCCTTACTTgtgggaaaatatttaaaatgatcTCTTTGAAAAGATTCAATTATCACATGAGTTGGCATGATGAATCTAAGCTGcacaaatgcaaattttgtgaTAAAAAGTTCATTCAAAACACACATTTAACAGTCCACGAGAGAACTCATACCGGAGAATGTCcatttaaatgcaataaatgtGGATTGGcatTCAAAAACTCAAATCTTTTAAGCAACCACACTCAAATGCATGGTGAAAAAGAAATACAATGCCCAGAGTGTCCTAAAAaattttttcaCCGTCATGCTTTGAAACTTCACATGCGAATCCATGACCCAGATAGAAAACAACCTCACTGTGAGATTTGTAATATAACATATCGATCTGATATGAATTTTAGGTTGCACAATTACCAAAAGCACAATGCACCTGCAACGCCATCAATACTTAACATTTTAAGAAAACGAGAAGTAAAGCATCCGGTTATAAAACCATATAAATGTAGTAACTGCCCACAAGCTTTTGTGCTGCACACACAGTTagtgaaacatttaaaaattcacGATGAAGAAAGGCCGTTCTCATGTAAGATCTGTTTAAAAGCTTTCAAACGAGCGGGACATTTGAAATTACACATGGATTCACTGCATTTGAACAAAAAACCACATAAATGTACAATATGCGGATGGGCTTTTCCACAAAGAAACAATTTGAAAGAGCACTTCGCTGCCAAACATGATAGTAAAAAAGACTTCAAATGTGATATTTGTGCCAAGGAGTTTTCGACAATAAAGTCTCTCAAAACACATATGGTAAaacattctgaaaaaaaaccATTTGTTTGTACAGTATGTAATAAGAGCTTTAAACGATTGATCGTGCTAAAAAATCACATGAGCGGCCATCTAAGGAAGAACGAGGCTGACATCGAAGGTGGTGATATAACGGATATTGTAGTTGAAGATGAATTGGAAGATGTTTAA
Protein Sequence: MDSVFINDYGLDMRKLDDQLPEMCRSFDEKDFLRNPNHPSTQRLSRNKQNTINELMKPHLVIYLDCPVNVIKNASRLALWTTSLSPKFSRMHILLTWRFTINSISLKTSVLMPTFLFMIGPLKNSHLIALKMSIADRTCRTCGKASELNDESVLLPIFKPVDFGSELKVIFEEFEIWNLNISQNDGLPQQICVTCFDSFCQIHNFRILCIEAQMNFGEMCTGLDIIIKDSLSDEDNDFSENFFGEESVIVQEYYKFPGDERLKSCASPDLADTIKKPLDSDAQDTIKQELDESNAVIPEFKKYRCEFCMEIVSFDDLDQLNEHYNKLHLTNLPYTCHKCDKCFDSKAKRNSHSRMHYRIVVDCEKCGKKVRGGKRMLIQHNENNHVNRDRECLTCGKIFKMISLKRFNYHMSWHDESKLHKCKFCDKKFIQNTHLTVHERTHTGECPFKCNKCGLAFKNSNLLSNHTQMHGEKEIQCPECPKKFFHRHALKLHMRIHDPDRKQPHCEICNITYRSDMNFRLHNYQKHNAPATPSILNILRKREVKHPVIKPYKCSNCPQAFVLHTQLVKHLKIHDEERPFSCKICLKAFKRAGHLKLHMDSLHLNKKPHKCTICGWAFPQRNNLKEHFAAKHDSKKDFKCDICAKEFSTIKSLKTHMVKHSEKKPFVCTVCNKSFKRLIVLKNHMSGHLRKNEADIEGGDITDIVVEDELEDV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00664282;
90% Identity: -
80% Identity: -