Dtri045228.1
Basic Information
- Insect
- Dasysyrphus tricinctus
- Gene Symbol
- -
- Assembly
- GCA_963921185.1
- Location
- OY992532.1:34633186-34650147[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.001 0.28 13.8 0.2 1 23 142 165 142 165 0.97 2 13 0.058 16 8.2 0.5 2 23 178 198 177 198 0.96 3 13 0.01 2.8 10.6 1.7 2 23 324 344 323 344 0.97 4 13 0.0024 0.66 12.6 1.4 1 23 350 373 350 373 0.95 5 13 0.63 1.7e+02 5.0 0.5 3 23 381 401 379 401 0.90 6 13 0.8 2.2e+02 4.6 5.6 2 23 406 427 405 427 0.97 7 13 0.00091 0.25 13.9 0.6 1 23 433 455 433 455 0.95 8 13 1.3e-06 0.00035 22.9 1.5 3 23 467 487 466 487 0.97 9 13 0.00028 0.076 15.5 1.5 3 23 496 516 494 516 0.93 10 13 8.6e-05 0.024 17.1 0.3 2 23 522 543 521 543 0.97 11 13 0.00056 0.15 14.6 3.0 1 20 549 568 549 571 0.93 12 13 0.001 0.28 13.8 0.6 2 23 577 598 576 598 0.91 13 13 2.5e-05 0.0068 18.8 0.3 1 23 603 626 603 626 0.98
Sequence Information
- Coding Sequence
- atgttCGACTCGCTACCTATTTGTCGAGTGTGTTTAAAAACGTCACTTGAATATATTGATTTCGATACTCCATTCGAGGTGGATGCCAGCATAAAAGCAATTGACAACGATCTCACGTACCTTGATTGTTTTCAAGCTTGTACTCGTATTGAGATcgaatttgatgaaaattatCCACAAAGTTTATGTAGTTCATGTGGTCTTGAACTTAAAATTGCTTATGAATTTCTTCAAAAAGCCGAATCTGCGGATAAAACGCTACGAGGAATATCTGCAAatacaaaagttgaaaaattcgATGATGAAGAAatGAAATGTTTCCTTCAACCTGAAATGATTACTTTAAATGATAATATAGCAGCTGAGGAAAATCCAATTCCACACCAGAAACTATTGGAAAATCAATTAGATGATGAAAAAACATATGTGTGCACAGTTTGTGGGGAGCAATTTTTCTCACAGATGGTTCTAAACATACACGTCAATCGGTCACATACAAATGATGATCAAAGCAACGCAGTAGATAAAGTTGAATGTCAGATTTGTGAAATGGTCTTGTCTTTAGATAGCTTGCACACCCATATGCAAATGCACGAAGAAGAATCCAACCTTCAAGACAATGACGATGACAATCAAGAGAAAACGACAATTTATGAGGAAGTAGTAGAAGTGGATGAACCCGAAGATGTCGAATTTGAAATGCTTGATATGACTCATATTTCTACCGATGAAGAAGAAGTGAGAAACATAAATGACTCCCAAGATGTAACCGACTCTCAAGATGTGACCGACTTTCAAGATGTAACCGACTCTCAAGATGTACCTGCCTCCGAAGGCTATGACCCAGTTGATGAAGATGAAGAGGAAATGCTCTcacaaatcaaaaatgaaaCAGATCCAGATTTCAATGTGATAGCAAAAATGATAACCGAACAAGAAAAACATCGAGTTAAAAAGGAGAAACATAAACAATGTGAGATTTGCAAGAAGCATGTACGAATAAGTTCTTTTACTGCACACATGAACGTACACAATGGTGTTCGTCAATTTCCATGCCAGTACTGTTTCCAGGCATACTTTTCAAACCGTTCATTGCAAAAACACGTTAAAGCGAACCATTCTGACATTCTGAACTCTTGTTGTAAAATATGTAATGAAACAGTTGAAGCCTCCGAGATGAAGGCACATATAGAAGAAAAACATTCGCATGTAGTAAAGTGCACGGAGTGTGATCATGAATGCCAAGAGTCTAAAATGAAAGACCACATGAAGAAGAAACATTCAGaatccaaagactatttatgcaATGTTTGTTCCAAAACATTCAAATCGCTTGGCATACTCAATGCCCATTTAAAATATCacgaaaaaaaagatgccaatGCTAGATCGGAGGCATGTGATATATGTAGCAAAGTATTCTCTTCGAATCACTATCTCAAAAAACATATGCTTATACATCAGGATGAACGTAAACTATTAGAATGTATTTACTGTGATAGGAGCTATCATTCAAAAAATTCCCTTGAAAATCATATGCGAATTCATACGGGTGACACAATCAAATGCGTTATGTGTGCAAAAGAATTTGGCCGGCAATACGAATTGAATGTTCACATGCGATTTCACACAAAAGAATATCCATTCGAATGTGAGCTATGCCAcaaaaaattcgcaataaagGGCCATCTGAGAACACATATGTGGCGTCATCAAGGTCTCAAGTTGCAGTGTGAAGAATGTGGAAAACTTTTTACATCCACCAAAGCTTTGCAAGAGCATTCCTTCTATCATTCTGAGATGCCCTACCAATGTGCGTACTGCCCAAAAGCCTATCCTTCGAAACCGAAATTCAAAGTTCATTTGAAAACTGCTCACATGGTGGAATTCTCGAATGACGAATtgcaaaaaatggcaaaattcACTGTACCAAAAAGACCTAGATCCAGAAAGTTTACATTAGTTCAGGCTGATACCGTACTTAAAGAAGTTGAAGTTCATACAAAAACTGAAATTGATTAG
- Protein Sequence
- MFDSLPICRVCLKTSLEYIDFDTPFEVDASIKAIDNDLTYLDCFQACTRIEIEFDENYPQSLCSSCGLELKIAYEFLQKAESADKTLRGISANTKVEKFDDEEMKCFLQPEMITLNDNIAAEENPIPHQKLLENQLDDEKTYVCTVCGEQFFSQMVLNIHVNRSHTNDDQSNAVDKVECQICEMVLSLDSLHTHMQMHEEESNLQDNDDDNQEKTTIYEEVVEVDEPEDVEFEMLDMTHISTDEEEVRNINDSQDVTDSQDVTDFQDVTDSQDVPASEGYDPVDEDEEEMLSQIKNETDPDFNVIAKMITEQEKHRVKKEKHKQCEICKKHVRISSFTAHMNVHNGVRQFPCQYCFQAYFSNRSLQKHVKANHSDILNSCCKICNETVEASEMKAHIEEKHSHVVKCTECDHECQESKMKDHMKKKHSESKDYLCNVCSKTFKSLGILNAHLKYHEKKDANARSEACDICSKVFSSNHYLKKHMLIHQDERKLLECIYCDRSYHSKNSLENHMRIHTGDTIKCVMCAKEFGRQYELNVHMRFHTKEYPFECELCHKKFAIKGHLRTHMWRHQGLKLQCEECGKLFTSTKALQEHSFYHSEMPYQCAYCPKAYPSKPKFKVHLKTAHMVEFSNDELQKMAKFTVPKRPRSRKFTLVQADTVLKEVEVHTKTEID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00335316;
- 90% Identity
- iTF_00426572;
- 80% Identity
- -