Dalb003738.2
Basic Information
- Insect
- Dasysyrphus albostriatus
- Gene Symbol
- -
- Assembly
- GCA_946251825.1
- Location
- CAMIUB010000030.1:3115741-3128585[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00087 0.13 13.8 0.2 1 23 142 165 142 165 0.97 2 13 0.05 7.5 8.2 0.5 2 23 178 198 177 198 0.96 3 13 0.0089 1.3 10.6 1.7 2 23 325 345 324 345 0.97 4 13 0.0021 0.31 12.6 1.4 1 23 351 374 351 374 0.95 5 13 0.87 1.3e+02 4.3 0.5 3 23 382 402 380 402 0.90 6 13 0.69 1e+02 4.6 5.6 2 23 407 428 406 428 0.97 7 13 0.00079 0.12 13.9 0.6 1 23 434 456 434 456 0.95 8 13 1.8e-06 0.00027 22.2 1.8 3 23 468 488 467 488 0.97 9 13 1.9e-05 0.0029 19.0 2.0 2 23 496 517 495 517 0.97 10 13 7.4e-05 0.011 17.1 0.3 2 23 523 544 522 544 0.97 11 13 0.00048 0.072 14.6 3.0 1 20 550 569 550 572 0.93 12 13 0.00087 0.13 13.8 0.6 2 23 578 599 577 599 0.91 13 13 2.1e-05 0.0032 18.8 0.3 1 23 604 627 604 627 0.98
Sequence Information
- Coding Sequence
- ATGTTCGATTCGCTACCTATTTGTCGAGTGTGTTTAAAAACATCACTTGAATATATTGATTTCGATACTCCATTCGAGGTGGACGCCAGCATAAAAGCAATTGACAACGATCTCACGTATCTTGATTGTTTTCAAGCTTGTACTCGTATTGAAATCGAATTCGATGAGAATTACCCACAAAGTTTATGCAGTTCATGTGGTCTTGAACTTAAAATTGCATATGAATTTCTTCAAAAAGCCGAATCTGCGGATAAAACGCTACGAGAAATATCTGCAAGTACAAAAGTTGAAAAATTCGATGATGAAGAAATGAAATGTTTCCTTCAACCTGAATTGATTCCTTCAAATGATAATGCTGCCACTGAGGAAAATCCAATTCCACATCAGAAACTATTAGAAAATCAAGTAGATGATGAAAAAACATATGTGTGCACAGTTTGTGGGGAACAATTTTTCTCACAGATGGTTCTAAACATACACGTCAATCGGTCACATGCGAATGATGATCAAAGCAACGTAGTAGATAAAGTTGAGTGTCAGATTTGTGAAATGGTCTTGTCTTTAGATAGCTTGCACACCCATATGCAAATGCACGAAGAAGAATCCAACCTTCAAGACAATGATGAAGATGATAATCATGAGAAAACAACAATTTATGAGGAAGTAGTAGAAATGGATGAACCCGAAGATGTCGAATTTGAAATGCTTGATATGACTCATGTTTCTACCGACGAAGAAGAAGTGAGAAATATAAATGACTCTCAAGATGTAACCGACTCTCAAGATGTAACCGACTTTCAAGATGTAACCGACTCTCAAGATGTACCTGCCTCCGAAGGCTATGAACCAGTTGATGAAGATGAAGAAGAAATGCTTTCACAAATCAAGAATGAAACCGATCCAGATTTCAATGTCATAGCAAAAATGATAACCGAACAAGAAAAACATCGAGTTAAAAGGGAGAAACATAAACAATGTGAAATTTGCAAGAAGCATGTGCGAATAAGTTCTTTCACTGCACACATGAACGTTCACAATGGTGTTCGTCAATTTCCATGCCAGTACTGTTTTCAGGCTTACTTTTCCAACCGTTCATTACAAAAACACGTTAAAGCTAACCATTCTGACATTCTAAACTCTTGTTGTAAAGTATGTAACGAAACGGTTGAAGCCTCCGATATGAAAGCTCACATAGAAGAAAAACATTCGCATGTAGTAAAGTGCACGGAGTGTGATCATGAATGCCAAGAGTCTAAAATGAAAGACCACATGAAGAAGAAACATTCAGAATCCAAAGACTATCTATGCAATGTTTGCTCCAAAACATTCAAATCGCTTGGCATACTCAATGCCCATTTAAAATATCACGAAAAAAAAGATGCCAATGCTAGATCGGAGGCATGTGATATATGTAGGAAAGTATTCTCTTCGAATCACTATCTCAAAAAACATATGCTAATACATCAGGATGAACGTAAACTATTAGAATGTATGTACTGTGATAGGAGCTATCATTCAAAaaattcccttgaaaatcatatgcgaattcatacgggtgacacaatcaaatgcgttatgtgtgcaaaagaatttggccggcaatacgaattgaatgttcacatgcgatttcacacaaaagaatatccattcgaatgtgagctgtgccacaaaaaattcgctattaaggGTCATCTGAGAACACATATGTGGCGTCATCAAGGTCTCAAGTTGCAGTGTGAAGAATGTGGAAAACTTTTTACATCCACCAAAGCTTTGCAAGAGCATTCCTTCTATCATTCTGAGATGCCCTACCAATGTGCGTACTGCCCAAAAGCCTATCCTTCGAAACCGAAATTCAAAGTTCATTTGAAAACTGCTCACATGGTGGAATTCTCGAATGACGAATTGCAAAAAATGGCAAAATTCATTGTACCAAAAAGACCTAGATCCAGAAAGTTTACCTTAGTTCAGGCAGATACCGTACTTAAAGAAGTTGAAGTTCATACAAAAATTGAAATTGACTAG
- Protein Sequence
- MFDSLPICRVCLKTSLEYIDFDTPFEVDASIKAIDNDLTYLDCFQACTRIEIEFDENYPQSLCSSCGLELKIAYEFLQKAESADKTLREISASTKVEKFDDEEMKCFLQPELIPSNDNAATEENPIPHQKLLENQVDDEKTYVCTVCGEQFFSQMVLNIHVNRSHANDDQSNVVDKVECQICEMVLSLDSLHTHMQMHEEESNLQDNDEDDNHEKTTIYEEVVEMDEPEDVEFEMLDMTHVSTDEEEVRNINDSQDVTDSQDVTDFQDVTDSQDVPASEGYEPVDEDEEEMLSQIKNETDPDFNVIAKMITEQEKHRVKREKHKQCEICKKHVRISSFTAHMNVHNGVRQFPCQYCFQAYFSNRSLQKHVKANHSDILNSCCKVCNETVEASDMKAHIEEKHSHVVKCTECDHECQESKMKDHMKKKHSESKDYLCNVCSKTFKSLGILNAHLKYHEKKDANARSEACDICRKVFSSNHYLKKHMLIHQDERKLLECMYCDRSYHSKNSLENHMRIHTGDTIKCVMCAKEFGRQYELNVHMRFHTKEYPFECELCHKKFAIKGHLRTHMWRHQGLKLQCEECGKLFTSTKALQEHSFYHSEMPYQCAYCPKAYPSKPKFKVHLKTAHMVEFSNDELQKMAKFIVPKRPRSRKFTLVQADTVLKEVEVHTKIEID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00335316;
- 90% Identity
- iTF_00427515;
- 80% Identity
- -