Dtri021742.1
Basic Information
- Insect
- Dasysyrphus tricinctus
- Gene Symbol
- rfx7.L
- Assembly
- GCA_963921185.1
- Location
- OY992530.1:276556716-276561254[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.6e-32 6.8e-28 99.2 0.0 3 78 26 101 24 102 0.97 2 2 3 7.9e+04 -3.7 0.0 26 41 917 932 912 935 0.82
Sequence Information
- Coding Sequence
- ATGCCTGGAGAATCACCAGACTCAGATCCTCTTAGGCAACCACAAAACCCATTAGGAACAAGATCTGAAATAAATCACACAATCAATTGGGTTCGCTCACATTTGGAACACGATCCAAAGGTTTCCATTCCAAAGCAAGACGTCTATAATGATTATCTagcatACTGTGAACGATTGGATATAAAACCTCTATCAACAGCAGATTTTGGTAAAGTAATGAAGCAAGTGTTTCCTGAGATTCGCCCAAGACGTTTGGGGACACGTGGACATTCCCGATATTGTTATGCTGCAATGCGAAAAACTACAAAACTTATTCCACCGCAACTACCGATGCTCGGTAGTAGTGGGCAGACTACAGATGCAGGAAGCAGTGAAATTGAATGCGACGCGAGTACAGATTCATGGAATACTATTCGTAATTGGGCGGAAGggcttttcaatataaaattcGACAGCATGAAAGACTTAGCCGAACATATTCGAAGTAACGAATATGCAGCCTGTGGTGGAGCTGGTAGTTCAAGAGTTCtgctgcaaaaaaaattacagcaAAGGGATGTTAAAGAGAAGAGAGTTTATGCTgATTCAGGTCCACTAAAAAAACGacgtaaaaaaaaacgtaaaggTTCAACATCATCTGAATCAAGCACCACCCAAAACCCTTCTTCGGTGGGCTCGATTAATGAACCATCGAAATCAAGTGATGAAGTTATCCTTACTGCGCTTACAATCAAACAGGAAATTCCTGATTCACCAAATTCGTTGCAATCCAGGCGCCAACAATTGCATTTTCAGCATTCCCCTGCTCCATTTGACAGTCAGATGCATGGCCAACAATTGCTACCTATGAATTTAGTCACCGAGAGTGAGCGTAGCAAGACTCTAAGTGTACAACTTCCGACAGGCAGCTCAGTGGCAAAGAACCTTACTAAAACAATCGTAGATCTACCCACTTCTGTGAGCCTATTGCCAATCGATCCCCAACTTTCATCTGTcaaagaagaaataataaatgatgaATATAATCCACAAAATGTGATCTGCAAAAAGGTACGAAGGGCACATCAGACCAAGGGTATATTAGCTACAAGTTGTACCCCATCGTCTTCGCTTACTGGACCAGCCATTGAAGTACAGCCTGTGTCACAAGCGATTGAGCTACCTACTGCGTCTGGTAGCAATTATTCTATGGGGCCACCAGCACAAATCACAACAACAGCAATGGAATCGGCAAAGTTAGCCTCTCAACTACGGGCAAGAAAGCAGCGGCTACTCCAAGCCCACCCTGACATATACCAATCGTACGATCCACAGCATCAGCACCTTATAGGACAGCAACATCAACCACCAACACTTGTCGACAACGTAGAAATAACAGAAGACAAAGATGTTGTTCTGCCGGAAAACCTTGGACTGCCACGAGAACGTGTGATTAGTATTTGCAACATGGACAAACATGAACTAGATGATTATTTGAATACAAACGACGAAGATAACTCCCAGGATCAAGAAGCTGAATTGCTTCAATATTTTCAGACGGGAGACGCTGAGAACAATAATAACACCAACAAACAAGCACCGccgcagcaacaacagcagcagcagcttttacaacaacaacaaagcaTAGATGCACATAACCCAACGTTAGCAGtaattaacaacaacaattctgCATTTGAAGCACCGAGCAAAAAGAAGTCCAATTATACAATAACAAGCAGCAGTGGCAATAGTTTCACAAAAGACCGTGAAGATATCACACAACTTCGTAATTATCTTCACCAGAATTTTAATAAAGATTCAAATGAAACAATTGGAACTACTGCCACGGCAACAGCAGCTAATCAGAGAGGATATTTTCAAGGACAGAAATTTACCTCCAATGGGAATCATTGTATTTTGCCGGGGTCAGCCTCAGCGTCTCTAGTAATCATGTCTCAAAAGCATCTTAACGAAATAACATCACCATCGAGAGATACAGTCGTCGCCGCCGCCCCCGCAGCAGcagtatcatcatcatcacttcCTACAACCACAATGGCTGTAACAACTGCTGCTATATCAAGAAATAATTCAATGGTTACATCTTCCGTTTCGATTCCAAATAATGTGCGTGCAacgcaaaaaagaaaaataaatcttaacGCAATGGTACCTGCTCCAAGTACAACGCAAAGGCGAAAGAACTGTACTTTCTTTCCAATTTCGCCAAATATAAATCTatcaaataacaaaacaaacaccACGACTTTGGTGTCGAGCTCCTCTTCTTCTGCAACACCAACGAccaattcaaatttatttgctAGTCCAAGATTAACCGCCCCCATGGGCCGAACAAAGCCAGTGTTGCACAAGCAGCATTCGCTGCCTGCTACCGTTGATAAGAATGCTATTTTGTCATCGGCAAATGATCCAATGATCGGATCTATTCGAAACAGTCGATCATATAGCACAATGACTTCAGCATCGGCGCCACCAAGTCCCTCGATACTGCAGGACACGCATATATTTGGCAAATCTTACACCACAACTAATGCCGGTAATTCCGTTAGTGGGTACAATCTACTTTTATCCAATCAAGACTACCCGCAGGGTTTTGGAAACTCGTGTGCTACAACGCACGATCAAAACTCACTTGAGTGCGTCCTTGACGAACCCCCAACACATTTGATGGCCGAATCGCGATCCCGTAGTGTCCCACTTCAATATCGTAACAGTCCCGCCTTTAATCAGACTGCTAACTATGCTGGATTTTCGTCAACTTGTAGTTCTGCTGCGCAGACTCCAGTGCCGCCACAATTCGCTGATTTCAATGATCCTTCTTCAATTTTGGATATATTCAGCGACACCAGTCAAACTCATGGTTCATCTATCAAACTGGAGGAATCAAATGGTAGTTTGCTCTGTAGTTCTATTAATGACATTCTTCAACCAGACTATGGCAGAATGCAGAATAATTTTGGTGGTATTGTTTCACGATCAGTGCCCTCGACACCTGTGCCGCTAAACAATGTCCTTGATCCGTTCCTCAGCGGAAGAAAACACCAGCAGCAACAAGATACCTTTCCGAGTGCACAAAGtaaatattcaacaaaaatgTACGACATATCTAAGTCCATGCCAACGACGCCAATCACATCGAACACAGCCACACCATCGTTTCGCTATAGCCCCGAATTCAATCGAGATTTTCTTATAAATGGGAATACTGTAGAAAGTACAACACCCTACAGTCGGGCTCCATCGGCCGCCGCAGTGAATAGTTTGTCCGATTCTCTGCTTGACGATGCTCGAGAAGGTGGTTCTAATTCTCTCACCGATGGCATGGACGATTTGACTAGTTTTGGTGAGGTTTCTGAATCAATAATGGAAGCAGACATACTGAATATGAATAATCTTTGA
- Protein Sequence
- MPGESPDSDPLRQPQNPLGTRSEINHTINWVRSHLEHDPKVSIPKQDVYNDYLAYCERLDIKPLSTADFGKVMKQVFPEIRPRRLGTRGHSRYCYAAMRKTTKLIPPQLPMLGSSGQTTDAGSSEIECDASTDSWNTIRNWAEGLFNIKFDSMKDLAEHIRSNEYAACGGAGSSRVLLQKKLQQRDVKEKRVYADSGPLKKRRKKKRKGSTSSESSTTQNPSSVGSINEPSKSSDEVILTALTIKQEIPDSPNSLQSRRQQLHFQHSPAPFDSQMHGQQLLPMNLVTESERSKTLSVQLPTGSSVAKNLTKTIVDLPTSVSLLPIDPQLSSVKEEIINDEYNPQNVICKKVRRAHQTKGILATSCTPSSSLTGPAIEVQPVSQAIELPTASGSNYSMGPPAQITTTAMESAKLASQLRARKQRLLQAHPDIYQSYDPQHQHLIGQQHQPPTLVDNVEITEDKDVVLPENLGLPRERVISICNMDKHELDDYLNTNDEDNSQDQEAELLQYFQTGDAENNNNTNKQAPPQQQQQQQLLQQQQSIDAHNPTLAVINNNNSAFEAPSKKKSNYTITSSSGNSFTKDREDITQLRNYLHQNFNKDSNETIGTTATATAANQRGYFQGQKFTSNGNHCILPGSASASLVIMSQKHLNEITSPSRDTVVAAAPAAAVSSSSLPTTTMAVTTAAISRNNSMVTSSVSIPNNVRATQKRKINLNAMVPAPSTTQRRKNCTFFPISPNINLSNNKTNTTTLVSSSSSSATPTTNSNLFASPRLTAPMGRTKPVLHKQHSLPATVDKNAILSSANDPMIGSIRNSRSYSTMTSASAPPSPSILQDTHIFGKSYTTTNAGNSVSGYNLLLSNQDYPQGFGNSCATTHDQNSLECVLDEPPTHLMAESRSRSVPLQYRNSPAFNQTANYAGFSSTCSSAAQTPVPPQFADFNDPSSILDIFSDTSQTHGSSIKLEESNGSLLCSSINDILQPDYGRMQNNFGGIVSRSVPSTPVPLNNVLDPFLSGRKHQQQQDTFPSAQSKYSTKMYDISKSMPTTPITSNTATPSFRYSPEFNRDFLINGNTVESTTPYSRAPSAAAVNSLSDSLLDDAREGGSNSLTDGMDDLTSFGEVSESIMEADILNMNNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00893601; iTF_00426090; iTF_01356609; iTF_01396227; iTF_01317962; iTF_00665369; iTF_00976187; iTF_00983967;
- 90% Identity
- iTF_00893601; iTF_00974372; iTF_00426090; iTF_00663790; iTF_00334709;
- 80% Identity
- -